source: sans/Dev/trunk/NCNR_User_Procedures/Analysis/Alpha/Tinker/FFT_Cubes_Includes.ipf @ 936

#pragma rtGlobals=1             // Use modern global access method.

#include "FFT_Panel"
#include "FFT_Cubes"
#include "FFT_VoxelDisplay"
#include "FFT_FillMatrixShapes"
#include "FFT_Debye_Spheres"

#include "FFT_Cylinder_Fills"
#include "FFT_Cylinder_2D_Fill"
#include "FFT_Plane_Fills"
#include "FFT_Lattice_Fills"
#include "FFT_Sphere_Fills"

#include "FFT_FillTests"                // testing and example routines (MAR 2012)

#include "FFT_ConcentratedSpheres"
#include "FFT_ConnectedRods"



Init_FFT()


Menu "Macros"
        "-"
        "Init_FFT"
        Submenu "Matrix Info"
                "Number of Points"
//              "Fill Statistics"                       //only valid for concentrated spheres...
                "Center_to_Center"
                "Davg_to_Np"
        end
        Submenu "3D Examples"
                "Polydisperse Spheres"
                "-"
                "Connect Points With Cylinders",ConnectDots3D()
                "Connect Triangulated Points",ConnectTriangulatedRods()
                "-"
                "Put Random Cylinders at Points"
                "Put X-axis Cylinders at Points"
                "Put X-axis Cylinders Square Grid",PutXAxisCylindersSquare()
                "Put X-axis Cylinders Hexagonal Grid",PutXAxisCylindersHexagonal()
                "Core-shell Cylinders Hex Grid",PutXAxisCoreShellCyl_HexGrid()
//              "-"
//              "Anisotropic_FFT_to_USANS"
//              "Isotropic_FFT_to_USANS"
        end
        Submenu "Matrix Viewing"
//              "ParseMatrix 3D to XYZ"
//              "Plot XYZ"                      //replaced by Gizmo
                "Animated Slices"
//              "Show Full Matrix"
        end
        Submenu "Automation Examples"
//              "Hexagonal Cylinders"
//              "Conc Sphere Loop"
//              "-"
//              "Overnight"
        end
//      Submenu "2D testing"
//              "Test 2D"
//              "Connect Dots 2D"
//              "Erase 2D"
//      end
//      "-"
//      "Include FFT Fit Functions"             //automatically loaded now...
End

// analysis must be loaded first
Proc IncludeFFTFitFunctions()
        NCNR_AnalysisLoader("Load NCNR Analysis Macros")
        Execute/P "INSERTINCLUDE \"FFT_Fit_Includes\""
        Execute/P "COMPILEPROCEDURES "
end


////// examples of different structures, shapes and techniques for generating structures
// other examples that could be added are:
// -- a tetrahedron w/ 4 different colors (rotation, transformation)
// -- core-shell spheres
// -- binary (touching) spheres of different SLD (would make a simple fit function too)
// -- ? other
// -- orientation-dependent structures vs. 2D analytic
// -- simple automation examples


Proc PolydisperseSpheres(nSph,rad,pd,nPass,tagStr)
        Variable nSph=505,rad=20,pd=0.25,nPass=10
        String tagStr="_Poly"
// nSph = number of LARGE spheres to add (not the voxel size)
// rad = mean radius of these large spheres
// pd = polydispersity (0,1)
// nPass = number of repeat averaging passes
// tagStr = extension string for the output name = "iBin"+tagStr
        TestConcSpheres(nSph,rad,pd,nPass,tagStr)
        Display $("iBin"+tagStr) vs $("qBin"+tagStr)
        ModifyGraph grid=1,mirror=2,log=1
        ModifyGraph mode=4,marker=2,msize=2
        Legend
End

Proc PutXAxisCoreShellCyl_HexGrid(w,rad,len,sep,fill)
        String w="mat"
        Variable rad=30,len=300,sep=100,fill=10
        Prompt w,"matrix"
        prompt rad,"radius of cylinders"
        prompt len,"length of cylinders"
        prompt sep,"center-to-center separation of cylinders"
        Prompt fill,"fill SLD value"
        
//      $w=0
        X_CoreShellCylinderHexGrid($w,rad,len,sep,fill)
        
        NumberOfPoints()
end

Function X_CoreShellCylinderHexGrid(mat,rad,len,sep,fill)
        Wave mat
        variable rad,len                //length of cylinders
        Variable sep                    // EDGE separation, in same units as cylinder
        Variable fill
        
        NVAR    solventSLD = root:FFT_SolventSLD
        
        NVAR grid=root:FFT_T
        Variable np,spacing
        np = DimSize(mat,0)                     // assumes that all dimensions are the same
        
        // fill a 2D plane with points
        Make/O/B/N=(np,np) plane
        plane = solventSLD

        spacing = round(sep/grid)               // so it's an integer
        FillPlaneHexagonal(plane,spacing,fill)
        
        // put it in the proper plane of the matrix
        mat[np/2][][] = plane[q][r]                     // in the YZ plane
        
        ParseMatrix3D_rho(mat)
        Wave x3d=x3d
        Wave y3d=y3d
        Wave z3d=z3d
        
        Variable ii=0,num
        num = numpnts(x3d)      
        
        for(ii=0;ii<num;ii+=1)
                FillXCylinder(mat,grid,rad,x3d[ii],y3d[ii],z3d[ii],len,fill)            //cylinder 1
        endfor

// makes a crude core-shell cylinder    
        for(ii=0;ii<num;ii+=1)
                FillXCylinder(mat,grid,rad-20,x3d[ii],y3d[ii],z3d[ii],len,3*fill)               //cylinder 1
        endfor
        
        return(0)
End