| 1 | #pragma rtGlobals=1 // Use modern global access method. |
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| 2 | #pragma version=1.00 |
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| 3 | #pragma IgorVersion=6.1 |
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| 4 | |
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| 5 | |
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| 6 | #if( Exists("XmlOpenFile") ) |
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| 7 | |
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| 8 | #include "cansasXML", version >= 1.10 |
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| 9 | |
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| 10 | // The function is called "LoadNISTXMLData" but is actually more generic |
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| 11 | // and will load any canSAS XML v1 dataset |
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| 12 | // Dec 2008 : |
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| 13 | // Caveats - Assumes Q in /A and I in /cm |
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| 14 | // Takes outStr as output name. If outStr is specified then we must load only the first SASData in the firstSASEntry, |
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| 15 | // since anything else doesn't make sense. This is a bit of a hack to support NSORT. |
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| 16 | |
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| 17 | |
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| 18 | function LoadNISTXMLData(filestr,outStr,doPlot,forceOverwrite) |
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| 19 | String filestr,outStr |
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| 20 | Variable doPlot,forceOverwrite |
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| 21 | |
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| 22 | |
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| 23 | Variable rr,gg,bb |
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| 24 | Variable dQv |
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| 25 | // NVAR/Z dQv = root:Packages:NIST:USANS_dQv //let USANS_CalcWeights set the dQv value |
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| 26 | |
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| 27 | |
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| 28 | // Print "Trying to load canSAS XML format data" |
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| 29 | Variable result = CS_XMLReader(filestr) |
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| 30 | |
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| 31 | String xmlReaderFolder = "root:Packages:CS_XMLreader:" |
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| 32 | |
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| 33 | if (result == 0) |
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| 34 | SetDataFolder xmlReaderFolder |
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| 35 | |
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| 36 | Variable i,j,numDataSets |
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| 37 | Variable np |
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| 38 | |
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| 39 | String w0,w1,w2,w3,w4,w5,basestr,fileName |
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| 40 | String xmlDataFolder,xmlDataSetFolder |
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| 41 | |
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| 42 | Variable numSASEntries |
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| 43 | |
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| 44 | if(!cmpStr(outStr,"")) |
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| 45 | //no outStr defined |
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| 46 | numSASEntries = CountObjects(xmlReaderFolder,4) |
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| 47 | else |
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| 48 | numSASEntries = 1 |
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| 49 | endif |
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| 50 | |
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| 51 | for (i = 0; i < numSASEntries; i+=1) |
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| 52 | |
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| 53 | xmlDataFolder = xmlReaderFolder+GetIndexedObjName(xmlReaderFolder,4,i)+":" |
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| 54 | if (!cmpstr(outstr,"")) |
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| 55 | numDataSets = CountObjects(xmlDataFolder,4) |
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| 56 | else |
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| 57 | numDataSets = 0 |
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| 58 | endif |
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| 59 | |
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| 60 | if (numDataSets > 0) |
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| 61 | //Multiple SASData sets in this SASEntry |
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| 62 | for (j = 0; j < numDataSets; j+=1) |
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| 63 | |
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| 64 | xmlDataSetFolder = xmlDataFolder+GetIndexedObjName(xmlDataFolder,4,j)+":" |
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| 65 | |
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| 66 | SetDataFolder xmlDataSetFolder |
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| 67 | // enforce a short enough name here to keep Igor objects < 31 chars |
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| 68 | // Multiple data sets so we need to use titles and run numbers for naming |
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| 69 | basestr = ShortFileNameString(CleanupName(getXMLDataSetTitle(xmlDataSetFolder,j,useFilename=0),0)) |
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| 70 | baseStr = CleanupName(baseStr,0) //in case the user added odd characters |
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| 71 | |
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| 72 | //String basestr = ParseFilePath(3, ParseFilePath(5,filestr,":",0,0),":",0,0) |
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| 73 | fileName = ParseFilePath(0,ParseFilePath(5,filestr,":",0,0),":",1,0) |
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| 74 | |
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| 75 | |
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| 76 | //print "In NIST XML Loader" |
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| 77 | //print "fileStr: ",fileStr |
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| 78 | //print "basestr: ",basestr |
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| 79 | //print "fileName: ",fileName |
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| 80 | //remove the semicolon AND period from files from the VAX |
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| 81 | // print basestr |
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| 82 | w0 = basestr + "_q" |
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| 83 | w1 = basestr + "_i" |
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| 84 | w2 = basestr + "_s" |
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| 85 | w3 = basestr + "sq" |
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| 86 | w4 = basestr + "qb" |
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| 87 | w5 = basestr + "fs" |
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| 88 | |
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| 89 | if(DataFolderExists("root:"+baseStr)) |
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| 90 | if(!forceOverwrite) |
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| 91 | DoAlert 1,"The data set " + basestr + " from file "+fileName+" has already been loaded. Do you want to load the new data file, overwriting the data in memory?" |
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| 92 | if(V_flag==2) //user selected No, don't load the data |
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| 93 | SetDataFolder root: |
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| 94 | if(DataFolderExists("root:Packages:NIST")) |
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| 95 | String/G root:Packages:NIST:gLastFileName = filename |
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| 96 | endif //set the last file loaded to the one NOT loaded |
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| 97 | return 0 //quits the macro |
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| 98 | endif |
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| 99 | endif |
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| 100 | SetDataFolder $("root:"+baseStr) |
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| 101 | else |
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| 102 | NewDataFolder/S $("root:"+baseStr) |
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| 103 | endif |
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| 104 | |
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| 105 | Duplicate/O $(xmlDataSetFolder+"Qsas") $w0 |
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| 106 | Duplicate/O $(xmlDataSetFolder+"Isas") $w1 |
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| 107 | Duplicate/O $(xmlDataSetFolder+"Idev") $w2 |
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| 108 | |
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| 109 | |
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| 110 | if (exists(xmlDataSetFolder+"Qdev")) |
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| 111 | Wave Qsas = $(xmlDataSetFolder+"Qsas") |
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| 112 | Wave Qdev = $(xmlDataSetFolder+"Qdev") |
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| 113 | |
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| 114 | Duplicate/O Qdev, $w3 |
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| 115 | // make a resolution matrix for SANS data |
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| 116 | np=numpnts($w0) |
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| 117 | Make/D/O/N=(np,4) $(baseStr+"_res") |
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| 118 | Wave reswave = $(baseStr+"_res") |
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| 119 | |
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| 120 | reswave[][0] = Qdev[p] //sigQ |
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| 121 | reswave[][3] = Qsas[p] //Qvalues |
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| 122 | if(exists(xmlDataSetFolder+"Qmean")) |
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| 123 | Wave Qmean = $(xmlDataSetFolder+"Qmean") |
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| 124 | Duplicate/O Qmean,$w4 |
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| 125 | reswave[][1] = Qmean[p] //qBar |
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| 126 | else |
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| 127 | reswave[][1] = Qsas[p] // If there is no Qmean specified, use Q values |
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| 128 | endif |
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| 129 | if(exists(xmlDataSetFolder+"Shadowfactor")) |
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| 130 | Wave Shadowfactor = $(xmlDataSetFolder+"Shadowfactor") |
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| 131 | Duplicate/O Shadowfactor, $w5 |
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| 132 | reswave[][2] = Shadowfactor[p] //fShad |
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| 133 | else |
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| 134 | reswave[][2] = 1 // default shadowfactor to 1 if it doesn't exist |
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| 135 | endif |
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| 136 | elseif(exists(xmlDataSetFolder+"dQl")) |
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| 137 | //USANS Data |
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| 138 | Wave dQl = $(xmlDataSetFolder+"dQl") |
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| 139 | dQv = abs(dQl[0]) |
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| 140 | |
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| 141 | USANS_CalcWeights(baseStr,dQv) |
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| 142 | else |
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| 143 | //No resolution data |
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| 144 | endif |
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| 145 | //get rid of the resolution waves that are in the matrix |
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| 146 | |
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| 147 | SetScale d,0,0,"1/A",$w0 |
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| 148 | SetScale d,0,0,"1/cm",$w1 |
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| 149 | |
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| 150 | |
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| 151 | |
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| 152 | ////// |
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| 153 | if(DataFolderExists("root:Packages:NIST")) |
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| 154 | String/G root:Packages:NIST:gLastFileName = filename |
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| 155 | endif |
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| 156 | |
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| 157 | |
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| 158 | //plot if desired |
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| 159 | if(doPlot) |
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| 160 | // assign colors randomly |
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| 161 | rr = abs(trunc(enoise(65535))) |
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| 162 | gg = abs(trunc(enoise(65535))) |
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| 163 | bb = abs(trunc(enoise(65535))) |
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| 164 | |
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| 165 | // if target window is a graph, and user wants to append, do so |
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| 166 | DoWindow/B Plot_Manager |
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| 167 | if(WinType("") == 1) |
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| 168 | DoAlert 1,"Do you want to append this data to the current graph?" |
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| 169 | if(V_Flag == 1) |
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| 170 | AppendToGraph $w1 vs $w0 |
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| 171 | ModifyGraph mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1) =(rr,gg,bb),tickUnit=1 |
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| 172 | ErrorBars/T=0 $w1 Y,wave=($w2,$w2) |
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| 173 | ModifyGraph tickUnit(left)=1 |
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| 174 | else |
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| 175 | //new graph |
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| 176 | Display $w1 vs $w0 |
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| 177 | ModifyGraph log=1,mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1)=(rr,gg,bb),tickUnit=1 |
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| 178 | ModifyGraph grid=1,mirror=2,standoff=0 |
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| 179 | ErrorBars/T=0 $w1 Y,wave=($w2,$w2) |
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| 180 | ModifyGraph tickUnit(left)=1 |
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| 181 | Label left "I(q)" |
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| 182 | Label bottom "q (A\\S-1\\M)" |
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| 183 | Legend |
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| 184 | endif |
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| 185 | else |
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| 186 | // graph window was not target, make new one |
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| 187 | Display $w1 vs $w0 |
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| 188 | ModifyGraph log=1,mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1)=(rr,gg,bb),tickUnit=1 |
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| 189 | ModifyGraph grid=1,mirror=2,standoff=0 |
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| 190 | ErrorBars/T=0 $w1 Y,wave=($w2,$w2) |
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| 191 | ModifyGraph tickUnit(left)=1 |
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| 192 | Label left "I(q)" |
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| 193 | Label bottom "q (A\\S-1\\M)" |
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| 194 | Legend |
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| 195 | endif |
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| 196 | endif |
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| 197 | |
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| 198 | endfor |
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| 199 | |
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| 200 | |
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| 201 | else |
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| 202 | //No multiple SASData sets for this SASEntry |
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| 203 | SetDataFolder xmlDataFolder |
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| 204 | |
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| 205 | // print xmlDataFolder |
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| 206 | |
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| 207 | //if outstr has been specified, we'll find ourselves here.... |
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| 208 | //We should default to using the filename here to make life easier on people who have used the NIST reduction... |
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| 209 | if (!cmpstr(outstr,"")) |
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| 210 | basestr = ShortFileNameString(CleanupName(getXMLDataSetTitle(xmlDataFolder,0,useFilename=1),0)) |
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| 211 | else |
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| 212 | basestr = ShortFileNameString(CleanupName(outstr,0)) |
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| 213 | endif |
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| 214 | |
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| 215 | //String basestr = ParseFilePath(3, ParseFilePath(5,filestr,":",0,0),":",0,0) |
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| 216 | fileName = ParseFilePath(0,ParseFilePath(5,filestr,":",0,0),":",1,0) |
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| 217 | |
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| 218 | //print "In NIST XML Loader" |
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| 219 | //print "fileStr: ",fileStr |
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| 220 | //print "basestr: ",basestr |
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| 221 | //print "fileName: ",fileName |
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| 222 | w0 = basestr + "_q" |
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| 223 | w1 = basestr + "_i" |
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| 224 | w2 = basestr + "_s" |
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| 225 | |
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| 226 | if(DataFolderExists("root:"+baseStr)) |
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| 227 | if(!forceOverwrite) |
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| 228 | DoAlert 1,"The data set " + basestr + " from file "+fileName+" has already been loaded. Do you want to load the new data file, overwriting the data in memory?" |
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| 229 | if(V_flag==2) //user selected No, don't load the data |
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| 230 | SetDataFolder root: |
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| 231 | if(DataFolderExists("root:Packages:NIST")) |
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| 232 | String/G root:Packages:NIST:gLastFileName = filename |
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| 233 | endif //set the last file loaded to the one NOT loaded |
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| 234 | return 0 //quits the macro |
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| 235 | endif |
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| 236 | endif |
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| 237 | SetDataFolder $("root:"+baseStr) |
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| 238 | else |
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| 239 | NewDataFolder/S $("root:"+baseStr) |
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| 240 | endif |
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| 241 | |
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| 242 | Duplicate/O $(xmlDataFolder+"Qsas") $w0 |
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| 243 | Duplicate/O $(xmlDataFolder+"Isas") $w1 |
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| 244 | Duplicate/O $(xmlDataFolder+"Idev") $w2 |
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| 245 | |
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| 246 | |
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| 247 | |
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| 248 | if (exists(xmlDataFolder+"Qdev")) |
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| 249 | Wave Qsas = $(xmlDataFolder+"Qsas") |
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| 250 | Wave Qdev = $(xmlDataFolder+"Qdev") |
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| 251 | |
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| 252 | // make a resolution matrix for SANS data |
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| 253 | np=numpnts($w0) |
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| 254 | Make/D/O/N=(np,4) $(baseStr+"_res") |
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| 255 | Wave reswave = $(baseStr+"_res") |
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| 256 | |
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| 257 | reswave[][0] = Qdev[p] //sigQ |
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| 258 | reswave[][3] = Qsas[p] //Qvalues |
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| 259 | if(exists(xmlDataFolder+"Qmean")) |
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| 260 | Wave Qmean = $(xmlDataFolder+"Qmean") |
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| 261 | reswave[][1] = Qmean[p] //qBar |
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| 262 | else |
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| 263 | reswave[][1] = Qsas[p] // If there is no Qmean specified, use Q values |
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| 264 | endif |
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| 265 | if(exists(xmlDataFolder+"Shadowfactor")) |
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| 266 | Wave Shadowfactor = $(xmlDataFolder+"Shadowfactor") |
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| 267 | reswave[][2] = Shadowfactor[p] //fShad |
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| 268 | else |
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| 269 | reswave[][2] = 1 // default shadowfactor to 1 if it doesn't exist |
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| 270 | endif |
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| 271 | elseif(exists(xmlDataFolder+"dQl")) |
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| 272 | //USANS Data |
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| 273 | Wave dQl = $(xmlDataFolder+"dQl") |
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| 274 | dQv = abs(dQl[0]) //make it positive again |
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| 275 | |
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| 276 | USANS_CalcWeights(baseStr,dQv) |
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| 277 | else |
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| 278 | //No resolution data |
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| 279 | endif |
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| 280 | //get rid of the resolution waves that are in the matrix |
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| 281 | |
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| 282 | SetScale d,0,0,"1/A",$w0 |
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| 283 | SetScale d,0,0,"1/cm",$w1 |
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| 284 | |
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| 285 | |
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| 286 | |
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| 287 | ////// |
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| 288 | if(DataFolderExists("root:Packages:NIST")) |
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| 289 | String/G root:Packages:NIST:gLastFileName = filename |
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| 290 | endif |
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| 291 | |
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| 292 | |
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| 293 | //plot if desired |
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| 294 | if(doPlot) |
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| 295 | // assign colors randomly |
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| 296 | rr = abs(trunc(enoise(65535))) |
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| 297 | gg = abs(trunc(enoise(65535))) |
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| 298 | bb = abs(trunc(enoise(65535))) |
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| 299 | |
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| 300 | // if target window is a graph, and user wants to append, do so |
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| 301 | DoWindow/B Plot_Manager |
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| 302 | if(WinType("") == 1) |
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| 303 | DoAlert 1,"Do you want to append this data to the current graph?" |
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| 304 | if(V_Flag == 1) |
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| 305 | AppendToGraph $w1 vs $w0 |
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| 306 | ModifyGraph mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1) =(rr,gg,bb),tickUnit=1 |
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| 307 | ErrorBars/T=0 $w1 Y,wave=($w2,$w2) |
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| 308 | ModifyGraph tickUnit(left)=1 |
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| 309 | else |
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| 310 | //new graph |
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| 311 | Display $w1 vs $w0 |
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| 312 | ModifyGraph log=1,mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1)=(rr,gg,bb),tickUnit=1 |
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| 313 | ModifyGraph grid=1,mirror=2,standoff=0 |
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| 314 | ErrorBars/T=0 $w1 Y,wave=($w2,$w2) |
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| 315 | ModifyGraph tickUnit(left)=1 |
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| 316 | Label left "I(q)" |
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| 317 | Label bottom "q (A\\S-1\\M)" |
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| 318 | Legend |
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| 319 | endif |
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| 320 | else |
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| 321 | // graph window was not target, make new one |
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| 322 | Display $w1 vs $w0 |
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| 323 | ModifyGraph log=1,mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1)=(rr,gg,bb),tickUnit=1 |
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| 324 | ModifyGraph grid=1,mirror=2,standoff=0 |
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| 325 | ErrorBars/T=0 $w1 Y,wave=($w2,$w2) |
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| 326 | ModifyGraph tickUnit(left)=1 |
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| 327 | Label left "I(q)" |
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| 328 | Label bottom "q (A\\S-1\\M)" |
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| 329 | Legend |
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| 330 | endif |
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| 331 | endif |
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| 332 | |
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| 333 | endif |
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| 334 | endfor |
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| 335 | endif |
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| 336 | |
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| 337 | //go back to the root folder and clean up before leaving |
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| 338 | SetDataFolder root: |
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| 339 | //KillDataFolder xmlReaderFolder |
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| 340 | |
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| 341 | |
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| 342 | end |
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| 343 | |
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| 344 | |
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| 345 | function/S GetXMLDataSetTitle(xmlDF,dsNum,[useFilename]) |
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| 346 | String xmlDF |
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| 347 | Variable dsNum |
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| 348 | Variable useFilename |
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| 349 | |
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| 350 | SVAR title = root:Packages:NIST:gXMLLoader_Title |
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| 351 | |
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| 352 | String mdstring = xmlDF+"metadata" |
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| 353 | String filename |
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| 354 | |
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| 355 | Wave/T meta = $mdstring |
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| 356 | |
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| 357 | //Get filename to use if useFilename is specified or as a fall back if title is missing. |
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| 358 | FindValue/TEXT="xmlFile"/TXOP=4/Z meta |
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| 359 | filename = ParseFilePath(0,TrimWS(meta[V_Value][1]),":",1,0) |
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| 360 | |
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| 361 | if (useFilename) |
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| 362 | return filename |
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| 363 | endif |
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| 364 | |
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| 365 | //Check for value when there are multiple datasets |
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| 366 | //Note that the use of FindValue here assumes that the tag is in column 0 so that V_Value |
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| 367 | //represents the row number |
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| 368 | //This will almost certainly break if your title was "Title" or "Run" |
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| 369 | FindValue/TEXT="Title"/TXOP=4/Z meta |
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| 370 | if (V_Value >= 0) |
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| 371 | //This should always be true as title is required in canSAS XML format |
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| 372 | title = TrimWS(meta[V_Value][1]) |
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| 373 | else |
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| 374 | title = filename |
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| 375 | endif |
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| 376 | //Check for Run value |
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| 377 | //If you get a run value, put it at the start of the string so it isn't lost if there is truncation |
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| 378 | //One hopes that the run number will be unique... |
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| 379 | FindValue/TEXT="Run_"+num2str(dsNum)/TXOP=4/Z meta |
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| 380 | if (V_Value >= 0) |
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| 381 | title = TrimWS(meta[V_Value][1])+" "+title |
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| 382 | //print title |
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| 383 | else |
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| 384 | FindValue/TEXT="Run"/TXOP=4/Z meta |
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| 385 | if (V_Value >= 0) |
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| 386 | title = TrimWS(meta[V_Value][1])+" "+title |
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| 387 | //print title |
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| 388 | endif |
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| 389 | endif |
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| 390 | |
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| 391 | return title |
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| 392 | end |
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| 393 | |
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| 394 | |
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| 395 | //Function to write NIST canSAS XML files |
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| 396 | //Minimalist XML file - AJJ Dec 2008 |
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| 397 | Function WriteNISTXML(fileName, NISTfile) |
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| 398 | String fileName |
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| 399 | Struct NISTXMLfile &NISTfile |
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| 400 | |
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| 401 | variable fileID |
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| 402 | |
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| 403 | //create the sasXML file with SASroot |
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| 404 | //no namespace, no prefix |
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| 405 | fileID = xmlcreatefile(fileName,"SASroot","cansas1d/1.0","") |
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| 406 | |
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| 407 | //create a version attribute for the root element |
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| 408 | xmlsetAttr(fileID,"/SASroot","","version","1.0") |
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| 409 | xmlsetAttr(fileID,"/SASroot","","xmlns:xsi","http://www.w3.org/2001/XMLSchema-instance") |
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| 410 | xmlsetAttr(fileID,"/SASroot","","xsi:schemaLocation","cansas1d/1.0 http://svn.smallangles.net/svn/canSAS/1dwg/trunk/cansas1d.xsd") |
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| 411 | |
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| 412 | |
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| 413 | //create the SASentry node |
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| 414 | xmladdnode(fileID,"/SASroot","","SASentry","",1) |
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| 415 | |
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| 416 | //create the Title node |
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| 417 | xmladdnode(fileID,"/SASroot/SASentry","","Title",NISTfile.Title,1) |
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| 418 | |
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| 419 | //create the Run node |
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| 420 | xmladdnode(fileID,"/SASroot/SASentry","","Run",NISTfile.Run,1) |
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| 421 | |
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| 422 | //create the SASdata node |
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| 423 | xmladdnode(fileID,"/SASroot/SASentry","","SASdata","",1) |
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| 424 | |
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| 425 | variable ii |
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| 426 | |
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| 427 | if (WaveExists(NISTfile.dQl) == 1) |
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| 428 | for(ii=0 ; ii<numpnts(NISTfile.Q) ; ii+=1) |
|---|
| 429 | xmladdnode(fileID,"/SASroot/SASentry/SASdata","","Idata","",1) |
|---|
| 430 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","Q",num2str(NISTfile.Q[ii]),1) |
|---|
| 431 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/Q","","unit",NISTfile.unitsQ) |
|---|
| 432 | |
|---|
| 433 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","I",num2str(NISTfile.I[ii]),1) |
|---|
| 434 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/I","","unit",NISTfile.unitsI) |
|---|
| 435 | |
|---|
| 436 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","Idev",num2str(NISTfile.Idev[ii]),1) |
|---|
| 437 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/Idev","","unit",NISTfile.unitsIdev) |
|---|
| 438 | |
|---|
| 439 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","dQl",num2str(NISTfile.dQl[ii]),1) |
|---|
| 440 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/dQl","","unit",NISTfile.unitsdQl) |
|---|
| 441 | endfor |
|---|
| 442 | else |
|---|
| 443 | for(ii=0 ; ii<numpnts(NISTfile.Q) ; ii+=1) |
|---|
| 444 | xmladdnode(fileID,"/SASroot/SASentry/SASdata","","Idata","",1) |
|---|
| 445 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","Q",num2str(NISTfile.Q[ii]),1) |
|---|
| 446 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/Q","","unit",NISTfile.unitsQ) |
|---|
| 447 | |
|---|
| 448 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","I",num2str(NISTfile.I[ii]),1) |
|---|
| 449 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/I","","unit",NISTfile.unitsI) |
|---|
| 450 | |
|---|
| 451 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","Idev",num2str(NISTfile.Idev[ii]),1) |
|---|
| 452 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/Idev","","unit",NISTfile.unitsIdev) |
|---|
| 453 | |
|---|
| 454 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","Qdev",num2str(NISTfile.Qdev[ii]),1) |
|---|
| 455 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/Qdev","","unit",NISTfile.unitsQdev) |
|---|
| 456 | |
|---|
| 457 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","Qmean",num2str(NISTfile.Qmean[ii]),1) |
|---|
| 458 | xmlsetAttr(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]/Qmean","","unit",NISTfile.unitsQmean) |
|---|
| 459 | |
|---|
| 460 | xmladdnode(fileID,"/SASroot/SASentry/SASdata/Idata["+num2istr(ii+1)+"]","","Shadowfactor",num2str(NISTfile.shadowfactor[ii]),1) |
|---|
| 461 | endfor |
|---|
| 462 | endif |
|---|
| 463 | |
|---|
| 464 | //SASsample node |
|---|
| 465 | xmladdnode(fileID,"/SASroot/SASentry","","SASsample","",1) |
|---|
| 466 | xmladdnode(fileID,"/SASroot/SASentry/SASsample","","ID",NISTfile.sample_ID,1) |
|---|
| 467 | |
|---|
| 468 | //SASInstrument node |
|---|
| 469 | xmladdnode(fileID,"/SASroot/SASentry","","SASinstrument","",1) |
|---|
| 470 | xmladdnode(fileID,"/SASroot/SASentry/SASinstrument","","name",NISTfile.nameSASinstrument,1) |
|---|
| 471 | |
|---|
| 472 | //SASsource |
|---|
| 473 | xmladdnode(fileID,"/SASroot/SASentry/SASinstrument","","SASsource","",1) |
|---|
| 474 | xmladdnode(fileID,"/SASroot/SASentry/SASinstrument/SASsource","","radiation",NISTfile.radiation,1) |
|---|
| 475 | |
|---|
| 476 | //SAScollimation |
|---|
| 477 | xmladdnode(fileID,"/SASroot/SASentry/SASinstrument","","SAScollimation","",1) |
|---|
| 478 | |
|---|
| 479 | //SASdetector |
|---|
| 480 | xmladdnode(fileID,"/SASroot/SASentry/SASinstrument","","SASdetector","",1) |
|---|
| 481 | xmladdnode(fileID,"/SASroot/SASentry/SASinstrument/SASdetector","","name",NISTfile.detector_name,1) |
|---|
| 482 | |
|---|
| 483 | |
|---|
| 484 | //SASprocess |
|---|
| 485 | xmladdnode(fileID,"/SASroot/SASentry","","SASprocess","",1) |
|---|
| 486 | xmlsetAttr(fileID,"/SASroot/SASentry/SASprocess","","name",NISTfile.nameSASprocess) |
|---|
| 487 | xmladdnode(fileID,"/SASroot/SASentry/SASprocess","","SASprocessnote",NISTfile.SASprocessnote,1) |
|---|
| 488 | |
|---|
| 489 | //SASnote |
|---|
| 490 | xmladdnode(fileID,"/SASroot/SASentry","","SASnote",NISTfile.SASnote,1) |
|---|
| 491 | |
|---|
| 492 | xmlsavefile(fileID) |
|---|
| 493 | xmlclosefile(fileID,0) |
|---|
| 494 | |
|---|
| 495 | end |
|---|
| 496 | |
|---|
| 497 | // |
|---|
| 498 | // !!! nf.Sample_ID is not set correctly here, since it's not read in from the NIST 6-col data file |
|---|
| 499 | // and SASprocessnote does not get set either! |
|---|
| 500 | // |
|---|
| 501 | Function ConvertNISTtoNISTXML(fileStr) |
|---|
| 502 | String fileStr |
|---|
| 503 | |
|---|
| 504 | Struct NISTXMLfile nf |
|---|
| 505 | |
|---|
| 506 | Variable rr,gg,bb,refnum,dQv |
|---|
| 507 | SetDataFolder root: |
|---|
| 508 | |
|---|
| 509 | if (cmpStr(fileStr,"") == 0) |
|---|
| 510 | //No filename given, open dialog |
|---|
| 511 | Open/D/R refnum |
|---|
| 512 | if (cmpstr(S_filename,"") == 0) |
|---|
| 513 | return 0 |
|---|
| 514 | else |
|---|
| 515 | fileStr = S_filename |
|---|
| 516 | endif |
|---|
| 517 | endif |
|---|
| 518 | |
|---|
| 519 | //Load the waves, using default waveX names |
|---|
| 520 | //if no path or file is specified for LoadWave, the default Mac open dialog will appear |
|---|
| 521 | LoadWave/G/D/A/Q fileStr |
|---|
| 522 | String fileNamePath = S_Path+S_fileName |
|---|
| 523 | String basestr = CleanupName(ParseFilePath(3,ParseFilePath(5,fileNamePath,":",0,0),":",0,0),0) |
|---|
| 524 | // String baseStr = CleanupName(S_fileName,0) |
|---|
| 525 | // print "basestr :"+basestr |
|---|
| 526 | String fileName = ParseFilePath(0,ParseFilePath(5,filestr,":",0,0),":",1,0) |
|---|
| 527 | // print "filename :"+filename |
|---|
| 528 | Variable numCols = V_flag |
|---|
| 529 | String outfileName = S_Path+basestr+".xml" |
|---|
| 530 | |
|---|
| 531 | |
|---|
| 532 | if(numCols==3) //simple 3-column data with no resolution information |
|---|
| 533 | |
|---|
| 534 | Wave nf.Q = $(StringFromList(0, S_waveNames ,";" )) |
|---|
| 535 | Wave nf.I = $(StringFromList(1, S_waveNames ,";" )) |
|---|
| 536 | Wave nf.Idev = $(StringFromList(2, S_waveNames ,";" )) |
|---|
| 537 | |
|---|
| 538 | //Set units |
|---|
| 539 | nf.unitsQ = "1/A" |
|---|
| 540 | nf.unitsI = "1/cm" |
|---|
| 541 | nf.unitsIdev = "1/cm" |
|---|
| 542 | |
|---|
| 543 | endif //3-col data |
|---|
| 544 | |
|---|
| 545 | if(numCols == 6) //6-column SANS or USANS data that has resolution information |
|---|
| 546 | |
|---|
| 547 | // put the names of the (default named) loaded waves into local names |
|---|
| 548 | Wave nf.Q = $(StringFromList(0, S_waveNames ,";" )) |
|---|
| 549 | Wave nf.I = $(StringFromList(1, S_waveNames ,";" )) |
|---|
| 550 | Wave nf.Idev = $(StringFromList(2, S_waveNames ,";" )) |
|---|
| 551 | |
|---|
| 552 | //Set units |
|---|
| 553 | nf.unitsQ = "1/A" |
|---|
| 554 | nf.unitsI = "1/cm" |
|---|
| 555 | nf.unitsIdev = "1/cm" |
|---|
| 556 | |
|---|
| 557 | WAVE resTest = $(StringFromList(3, S_waveNames ,";" )) |
|---|
| 558 | |
|---|
| 559 | // need to switch based on SANS/USANS |
|---|
| 560 | if (isSANSResolution(resTest[0])) //checks to see if the first point of the wave is <0] |
|---|
| 561 | Wave nf.Qdev = $(StringFromList(3, S_waveNames ,";" )) |
|---|
| 562 | Wave nf.Qmean = $(StringFromList(4, S_waveNames ,";" )) |
|---|
| 563 | Wave nf.Shadowfactor = $(StringFromList(5, S_waveNames ,";" )) |
|---|
| 564 | |
|---|
| 565 | //Set units |
|---|
| 566 | nf.unitsQdev = "1/A" |
|---|
| 567 | nf.unitsQmean = "1/A" |
|---|
| 568 | else |
|---|
| 569 | Wave nf.dQl = $(StringFromList(3, S_waveNames ,";" )) |
|---|
| 570 | nf.dQl = abs(nf.dQl) |
|---|
| 571 | |
|---|
| 572 | //Set units |
|---|
| 573 | nf.unitsdQl = "1/A" |
|---|
| 574 | |
|---|
| 575 | endif |
|---|
| 576 | |
|---|
| 577 | endif //6-col data |
|---|
| 578 | |
|---|
| 579 | //Get file header |
|---|
| 580 | setmetadataFromASCHeader(fileStr,nf) |
|---|
| 581 | |
|---|
| 582 | //Set required metadata that we can't get from these files |
|---|
| 583 | nf.detector_name = "Ordela 128x128" |
|---|
| 584 | nf.nameSASinstrument = "NIST NG3/NG7 SANS" |
|---|
| 585 | nf.radiation = "neutron" |
|---|
| 586 | nf.sample_ID = nf.title |
|---|
| 587 | nf.nameSASProcess = "NIST Data Converter" |
|---|
| 588 | nf.sasnote = "Data converted from previous NIST format. SASProcessnote contains header from original text file." |
|---|
| 589 | |
|---|
| 590 | writeNISTXML(outfileName, nf) |
|---|
| 591 | |
|---|
| 592 | //Tidy up AFTER we're all done, since STRUCT points to wave0,wave1, etc. |
|---|
| 593 | Variable i = 0 |
|---|
| 594 | do |
|---|
| 595 | WAVE/Z wv= $(StringFromList(i,S_waveNames,";")) |
|---|
| 596 | if( WaveExists(wv) == 0 ) |
|---|
| 597 | break |
|---|
| 598 | endif |
|---|
| 599 | KillWaves wv |
|---|
| 600 | i += 1 |
|---|
| 601 | while (1) // exit is via break statement |
|---|
| 602 | |
|---|
| 603 | end |
|---|
| 604 | |
|---|
| 605 | function SetMetadataFromASCHeader(fileStr,NISTfile) |
|---|
| 606 | String fileStr |
|---|
| 607 | Struct NISTXMLfile &NISTfile |
|---|
| 608 | |
|---|
| 609 | String hdr="",buffer="" |
|---|
| 610 | Variable lineNum = 0, fileref |
|---|
| 611 | Variable num |
|---|
| 612 | |
|---|
| 613 | Open/R fileref as fileStr |
|---|
| 614 | do |
|---|
| 615 | FReadLine fileref, buffer |
|---|
| 616 | if (stringmatch(buffer,"*The 6 columns are*") == 1) |
|---|
| 617 | break |
|---|
| 618 | endif |
|---|
| 619 | buffer = RemoveEnding(buffer) |
|---|
| 620 | // print buffer |
|---|
| 621 | //Get run value |
|---|
| 622 | if (stringmatch(buffer,"*file:*") == 1) |
|---|
| 623 | NISTfile.run = TrimWS(StringFromList(0,StringFromList(1, buffer, ":"),"C")) |
|---|
| 624 | elseif (stringmatch(buffer,"combined file*") == 1) |
|---|
| 625 | NISTfile.run = "Combined Data" |
|---|
| 626 | endif |
|---|
| 627 | |
|---|
| 628 | //Get title value |
|---|
| 629 | if (stringmatch(buffer,"*FIRST File LABEL:*") == 1) |
|---|
| 630 | NISTfile.title = TrimWS(StringFromList(1,buffer, ":")) |
|---|
| 631 | endif |
|---|
| 632 | if(stringmatch(buffer,"*LABEL:*") == 1) |
|---|
| 633 | NISTfile.title = TrimWS(StringFromList(1,buffer, ":")) |
|---|
| 634 | endif |
|---|
| 635 | if(stringmatch(buffer,"NSORT*") == 1) |
|---|
| 636 | NISTfile.title = buffer |
|---|
| 637 | endif |
|---|
| 638 | |
|---|
| 639 | hdr += buffer+"\n" |
|---|
| 640 | while(strlen(buffer) > 0) |
|---|
| 641 | |
|---|
| 642 | if (strlen(NISTfile.title) == 0) |
|---|
| 643 | NISTfile.title = CleanupName(ParseFilePath(3,ParseFilePath(5,fileStr,":",0,0),":",0,0),0) |
|---|
| 644 | endif |
|---|
| 645 | if (strlen(NISTfile.run) == 0) |
|---|
| 646 | NISTfile.run = "Unknown" |
|---|
| 647 | endif |
|---|
| 648 | |
|---|
| 649 | NISTfile.sasprocessnote = RemoveEnding(hdr) |
|---|
| 650 | |
|---|
| 651 | end |
|---|
| 652 | |
|---|
| 653 | //for writing out data (q-i-s) from the "type" folder, and including reduction information |
|---|
| 654 | //if fullpath is a complete HD path:filename, no dialog will be presented |
|---|
| 655 | //if fullpath is just a filename, the save dialog will be presented |
|---|
| 656 | //if dialog = 1, a dialog will always be presented |
|---|
| 657 | // |
|---|
| 658 | // root:myGlobals:Protocols:gProtoStr is the name of the currently active protocol |
|---|
| 659 | // |
|---|
| 660 | //AJJ Nov 2009 : This version of the function currently only works for Circular, Sector and Rectangular averages |
|---|
| 661 | //i.e. anything that produces I vs Q. Need to add ability to handle Annular (I vs theta) but that requires namespace addition to XML format |
|---|
| 662 | //and handling on load. |
|---|
| 663 | Function WriteXMLWaves_W_Protocol(type,fullpath,dialog) |
|---|
| 664 | String type,fullpath |
|---|
| 665 | Variable dialog //=1 will present dialog for name |
|---|
| 666 | |
|---|
| 667 | Struct NISTXMLfile nf |
|---|
| 668 | |
|---|
| 669 | String destStr="" |
|---|
| 670 | destStr = "root:Packages:NIST:"+type |
|---|
| 671 | |
|---|
| 672 | Variable refNum |
|---|
| 673 | // String fname,ave="C",hdrStr1="",hdrStr2="" |
|---|
| 674 | // Variable step=1 |
|---|
| 675 | |
|---|
| 676 | //*****these waves MUST EXIST, or IGOR Pro will crash, with a type 2 error**** |
|---|
| 677 | WAVE intw=$(destStr + ":integersRead") |
|---|
| 678 | WAVE rw=$(destStr + ":realsRead") |
|---|
| 679 | WAVE/T textw=$(destStr + ":textRead") |
|---|
| 680 | WAVE qvals =$(destStr + ":qval") |
|---|
| 681 | WAVE inten=$(destStr + ":aveint") |
|---|
| 682 | WAVE sig=$(destStr + ":sigave") |
|---|
| 683 | WAVE qbar = $(destStr + ":QBar") |
|---|
| 684 | WAVE sigmaq = $(destStr + ":SigmaQ") |
|---|
| 685 | WAVE fsubs = $(destStr + ":fSubS") |
|---|
| 686 | |
|---|
| 687 | |
|---|
| 688 | SVAR gProtoStr = root:myGlobals:Protocols:gProtoStr |
|---|
| 689 | Wave/T proto=$("root:myGlobals:Protocols:"+gProtoStr) |
|---|
| 690 | |
|---|
| 691 | |
|---|
| 692 | //check each wave |
|---|
| 693 | If(!(WaveExists(intw))) |
|---|
| 694 | Abort "intw DNExist BinaryWrite_W_Protocol()" |
|---|
| 695 | Endif |
|---|
| 696 | If(!(WaveExists(rw))) |
|---|
| 697 | Abort "rw DNExist BinaryWrite_W_Protocol()" |
|---|
| 698 | Endif |
|---|
| 699 | If(!(WaveExists(textw))) |
|---|
| 700 | Abort "textw DNExist BinaryWrite_W_Protocol()" |
|---|
| 701 | Endif |
|---|
| 702 | If(!(WaveExists(qvals))) |
|---|
| 703 | Abort "qvals DNExist BinaryWrite_W_Protocol()" |
|---|
| 704 | Endif |
|---|
| 705 | If(!(WaveExists(inten))) |
|---|
| 706 | Abort "inten DNExist BinaryWrite_W_Protocol()" |
|---|
| 707 | Endif |
|---|
| 708 | If(!(WaveExists(sig))) |
|---|
| 709 | Abort "sig DNExist BinaryWrite_W_Protocol()" |
|---|
| 710 | Endif |
|---|
| 711 | If(!(WaveExists(qbar))) |
|---|
| 712 | Abort "qbar DNExist BinaryWrite_W_Protocol()" |
|---|
| 713 | Endif |
|---|
| 714 | If(!(WaveExists(sigmaq))) |
|---|
| 715 | Abort "sigmaq DNExist BinaryWrite_W_Protocol()" |
|---|
| 716 | Endif |
|---|
| 717 | If(!(WaveExists(fsubs))) |
|---|
| 718 | Abort "fsubs DNExist BinaryWrite_W_Protocol()" |
|---|
| 719 | Endif |
|---|
| 720 | If(!(WaveExists(proto))) |
|---|
| 721 | Abort "current protocol wave DNExist BinaryWrite_W_Protocol()" |
|---|
| 722 | Endif |
|---|
| 723 | |
|---|
| 724 | if(dialog) |
|---|
| 725 | PathInfo/S catPathName |
|---|
| 726 | fullPath = DoSaveFileDialog("Save data as") |
|---|
| 727 | If(cmpstr(fullPath,"")==0) |
|---|
| 728 | //user cancel, don't write out a file |
|---|
| 729 | Close/A |
|---|
| 730 | Abort "no data file was written" |
|---|
| 731 | Endif |
|---|
| 732 | //Print "dialog fullpath = ",fullpath |
|---|
| 733 | Endif |
|---|
| 734 | |
|---|
| 735 | SVAR samFiles = $("root:Packages:NIST:"+type+":fileList") |
|---|
| 736 | //actually open the file here |
|---|
| 737 | //Open refNum as fullpath |
|---|
| 738 | |
|---|
| 739 | //Data |
|---|
| 740 | Wave nf.Q = qvals |
|---|
| 741 | nf.unitsQ = "1/A" |
|---|
| 742 | Wave nf.I = inten |
|---|
| 743 | nf.unitsI = "1/cm" |
|---|
| 744 | Wave nf.Idev = sig |
|---|
| 745 | nf.unitsIdev = "1/cm" |
|---|
| 746 | Wave nf.Qdev = sigmaq |
|---|
| 747 | nf.unitsQdev = "1/A" |
|---|
| 748 | Wave nf.Qmean = qbar |
|---|
| 749 | nf.unitsQmean = "1/A" |
|---|
| 750 | Wave nf.Shadowfactor = fSubS |
|---|
| 751 | nf.unitsShadowfactor = "none" |
|---|
| 752 | |
|---|
| 753 | |
|---|
| 754 | //write out the standard header information |
|---|
| 755 | //fprintf refnum,"FILE: %s\t\t CREATED: %s\r\n",textw[0],textw[1] |
|---|
| 756 | |
|---|
| 757 | //AJJ to fix with sensible values |
|---|
| 758 | nf.run = "Test" |
|---|
| 759 | String acct = textw[3] |
|---|
| 760 | nf.nameSASinstrument = acct[1,3] |
|---|
| 761 | nf.SASnote = "" |
|---|
| 762 | // |
|---|
| 763 | nf.sample_ID = textw[6] |
|---|
| 764 | nf.title = textw[6] |
|---|
| 765 | nf.radiation = "neutron" |
|---|
| 766 | nf.wavelength = rw[26] |
|---|
| 767 | nf.unitswavelength = "A" |
|---|
| 768 | nf.offset_angle = rw[19] |
|---|
| 769 | nf.unitsoffset_angle = "cm" |
|---|
| 770 | nf.SDD = rw[18] |
|---|
| 771 | nf.unitsSDD = "m" |
|---|
| 772 | nf.sample_transmission = rw[4] |
|---|
| 773 | nf.sample_thickness = rw[5] |
|---|
| 774 | nf.unitssample_thickness = "mm" |
|---|
| 775 | |
|---|
| 776 | nf.beamcenter_X = rw[16] |
|---|
| 777 | nf.beamcenter_Y = rw[17] |
|---|
| 778 | nf.unitsbeamcenter_X = "pixels" |
|---|
| 779 | nf.unitsbeamcenter_Y = "pixels" |
|---|
| 780 | nf.source_aperture = rw[23] |
|---|
| 781 | nf.typesource_aperture = "pinhole" |
|---|
| 782 | nf.unitssource_aperture = "mm" |
|---|
| 783 | nf.sample_aperture = rw[24] |
|---|
| 784 | nf.typesample_aperture = "pinhole" |
|---|
| 785 | nf.unitssample_aperture = "mm" |
|---|
| 786 | //nf.collimation_length = total length - rw[25] |
|---|
| 787 | nf.wavelength_spread = rw[27] |
|---|
| 788 | nf.unitswavelength_spread = "percent" |
|---|
| 789 | //Do something with beamstop (rw[21]) |
|---|
| 790 | nf.detector_name = textW[9] |
|---|
| 791 | // fprintf refnum,"MON CNT LAMBDA DET ANG DET DIST TRANS THICK AVE STEP\r\n" |
|---|
| 792 | // fprintf refnum,hdrStr1 |
|---|
| 793 | |
|---|
| 794 | // fprintf refnum,"BCENT(X,Y) A1(mm) A2(mm) A1A2DIST(m) DL/L BSTOP(mm) DET_TYP \r\n" |
|---|
| 795 | // fprintf refnum,hdrStr2 |
|---|
| 796 | |
|---|
| 797 | //insert protocol information here |
|---|
| 798 | //-1 list of sample files |
|---|
| 799 | //0 - bkg |
|---|
| 800 | //1 - emp |
|---|
| 801 | //2 - div |
|---|
| 802 | //3 - mask |
|---|
| 803 | //4 - abs params c2-c5 |
|---|
| 804 | //5 - average params |
|---|
| 805 | nf.SASprocessnote = "SAM: "+samFiles+"\n" |
|---|
| 806 | nf.SASprocessnote += "BGD: "+proto[0]+"\n" |
|---|
| 807 | nf.SASprocessnote += "EMP: "+Proto[1]+"\n" |
|---|
| 808 | nf.SASprocessnote += "DIV: "+Proto[2]+"\n" |
|---|
| 809 | nf.SASprocessnote += "MASK: "+Proto[3]+"\n" |
|---|
| 810 | nf.SASprocessnote += "ABS Parameters (3-6): "+Proto[4]+"\n" |
|---|
| 811 | nf.SASprocessnote += "Average Choices: "+Proto[5]+"\n" |
|---|
| 812 | |
|---|
| 813 | nf.nameSASProcess = "NIST IGOR" |
|---|
| 814 | |
|---|
| 815 | //Close refnum |
|---|
| 816 | |
|---|
| 817 | writeNISTXML(fullpath, nf) |
|---|
| 818 | |
|---|
| 819 | SetDataFolder root: //(redundant) |
|---|
| 820 | |
|---|
| 821 | //write confirmation of write operation to history area |
|---|
| 822 | Print "Averaged XML File written: ", GetFileNameFromPathNoSemi(fullPath) |
|---|
| 823 | KillWaves/Z tempShortProto |
|---|
| 824 | Return(0) |
|---|
| 825 | End |
|---|
| 826 | |
|---|
| 827 | Function WriteNSORTedXMLFile(qw,iw,sw,firstFileName,secondFileName,thirdFileName,fourthFileName,normTo,norm12,norm23,norm34,[res]) |
|---|
| 828 | Wave qw,iw,sw,res |
|---|
| 829 | String firstFileName,secondFileName,thirdFileName,fourthFileName,normTo |
|---|
| 830 | Variable norm12,norm23,norm34 |
|---|
| 831 | |
|---|
| 832 | Variable err=0,refNum,numCols,dialog=1 |
|---|
| 833 | String fullPath="",formatStr="",str2 |
|---|
| 834 | //check each wave - else REALLY FATAL error when writing file |
|---|
| 835 | If(!(WaveExists(qw))) |
|---|
| 836 | err = 1 |
|---|
| 837 | return err |
|---|
| 838 | Endif |
|---|
| 839 | If(!(WaveExists(iw))) |
|---|
| 840 | err = 1 |
|---|
| 841 | return err |
|---|
| 842 | Endif |
|---|
| 843 | If(!(WaveExists(sw))) |
|---|
| 844 | err = 1 |
|---|
| 845 | return err |
|---|
| 846 | Endif |
|---|
| 847 | |
|---|
| 848 | if(WaveExists(res)) |
|---|
| 849 | numCols = 6 |
|---|
| 850 | else |
|---|
| 851 | numCols = 3 |
|---|
| 852 | endif |
|---|
| 853 | |
|---|
| 854 | // 05SEP05 SRK -- added to automatically combine files from a table - see the end of NSORT.ipf for details |
|---|
| 855 | // - use the flag set in DoCombineFiles() to decide if the table entries should be used |
|---|
| 856 | //Ê Êroot:myGlobals:CombineTable:useTable= (1) (0) |
|---|
| 857 | //if(exists("root:myGlobals:CombineTable:SaveName")) |
|---|
| 858 | NVAR/Z useTable = root:myGlobals:CombineTable:useTable |
|---|
| 859 | if(NVAR_Exists(useTable) && useTable==1) |
|---|
| 860 | SVAR str=root:myGlobals:CombineTable:SaveNameStr //messy, but pass in as a global |
|---|
| 861 | fullPath = str |
|---|
| 862 | // str2 = "Is the file name "+str+" correct?" |
|---|
| 863 | // DoAlert 1,str2 |
|---|
| 864 | // if(V_flag==1) |
|---|
| 865 | dialog=0 //bypass the dialog if the name is good (assumed, since DoAlert is bypassed) |
|---|
| 866 | // endif |
|---|
| 867 | endif |
|---|
| 868 | |
|---|
| 869 | if(dialog) |
|---|
| 870 | PathInfo/S catPathName |
|---|
| 871 | fullPath = DoSaveFileDialog("Save XML data as",fname="",suffix=".ABSx") //won't actually open the file |
|---|
| 872 | If(cmpstr(fullPath,"")==0) |
|---|
| 873 | //user cancel, don't write out a file |
|---|
| 874 | Close/A |
|---|
| 875 | Abort "no data file was written" |
|---|
| 876 | Endif |
|---|
| 877 | //Print "dialog fullpath = ",fullpath |
|---|
| 878 | Endif |
|---|
| 879 | |
|---|
| 880 | Struct NISTxmlfile nf |
|---|
| 881 | |
|---|
| 882 | //Data |
|---|
| 883 | Wave nf.Q = qw |
|---|
| 884 | nf.unitsQ = "1/A" |
|---|
| 885 | Wave nf.I = iw |
|---|
| 886 | nf.unitsI = "1/cm" |
|---|
| 887 | Wave nf.Idev = sw |
|---|
| 888 | nf.unitsIdev = "1/cm" |
|---|
| 889 | |
|---|
| 890 | //write out the standard header information |
|---|
| 891 | //fprintf refnum,"FILE: %s\t\t CREATED: %s\r\n",textw[0],textw[1] |
|---|
| 892 | |
|---|
| 893 | //AJJ to fix with sensible values |
|---|
| 894 | nf.run = "" |
|---|
| 895 | nf.nameSASinstrument = "NIST IGOR" |
|---|
| 896 | nf.SASnote = "" |
|---|
| 897 | // |
|---|
| 898 | nf.sample_ID = ParseFilePath(3, fullPath, ":", 0, 0) |
|---|
| 899 | nf.title = ParseFilePath(3, fullPath, ":", 0, 0) |
|---|
| 900 | nf.radiation = "neutron" |
|---|
| 901 | //Do something with beamstop (rw[21]) |
|---|
| 902 | nf.detector_name = "NSORTed Data" |
|---|
| 903 | nf.nameSASProcess = "NIST IGOR" |
|---|
| 904 | |
|---|
| 905 | nf.sasProcessNote = "COMBINED FILE CREATED: "+date()+"\n" |
|---|
| 906 | nf.sasProcessNote += "NSORT-ed : " +firstFileName+";"+secondFileName+";"+thirdFileName+";"+fourthFileName+"\n" |
|---|
| 907 | nf.sasProcessNote += "normalized to "+normTo+"\n" |
|---|
| 908 | fprintf refNum, "multiplicative factor 1-2 = "+num2str(norm12)+" multiplicative factor 2-3 = "+num2str(norm23)+" multiplicative factor 3-4 = "+num2str(norm34)+"\n" |
|---|
| 909 | |
|---|
| 910 | if (numCols == 3) |
|---|
| 911 | writeNISTXML(fullpath,nf) |
|---|
| 912 | elseif (numCols == 6) |
|---|
| 913 | Make/O/N=(dimsize(res,0)) sigq = res[p][0] |
|---|
| 914 | Make/O/N=(dimsize(res,0)) qbar = res[p][1] |
|---|
| 915 | Make/O/N=(dimsize(res,0)) fs = res[p][2] |
|---|
| 916 | |
|---|
| 917 | Wave nf.Qdev = sigQ |
|---|
| 918 | nf.unitsQdev = "1/A" |
|---|
| 919 | Wave nf.Qmean = qbar |
|---|
| 920 | nf.unitsQmean = "1/A" |
|---|
| 921 | Wave nf.Shadowfactor = fs |
|---|
| 922 | nf.unitsShadowfactor = "none" |
|---|
| 923 | |
|---|
| 924 | writeNISTXML(fullpath,nf) |
|---|
| 925 | |
|---|
| 926 | Killwaves/Z sigq,qbar,fs |
|---|
| 927 | endif |
|---|
| 928 | |
|---|
| 929 | Return err |
|---|
| 930 | End |
|---|
| 931 | |
|---|
| 932 | |
|---|
| 933 | |
|---|
| 934 | /// See WriteModelData_v40.ipf for 6 column equivalent |
|---|
| 935 | // |
|---|
| 936 | // will abort if resolution wave is missing |
|---|
| 937 | // switches for USANS data if the proper global is found, otheriwse treats as SANS data |
|---|
| 938 | // |
|---|
| 939 | Function ReWrite1DXMLData(folderStr) |
|---|
| 940 | String folderStr |
|---|
| 941 | |
|---|
| 942 | String fullpath="" |
|---|
| 943 | Variable dialog=1 |
|---|
| 944 | String dataSetFolderParent,basestr,fullBase |
|---|
| 945 | |
|---|
| 946 | Struct NISTXMLfile nf |
|---|
| 947 | |
|---|
| 948 | //Abuse ParseFilePath to get path without folder name |
|---|
| 949 | dataSetFolderParent = ParseFilePath(1,folderStr,":",1,0) |
|---|
| 950 | //Abuse ParseFilePath to get basestr |
|---|
| 951 | basestr = ParseFilePath(0,folderStr,":",1,0) |
|---|
| 952 | |
|---|
| 953 | SetDataFolder $(dataSetFolderParent+basestr) |
|---|
| 954 | WAVE/Z qw = $(baseStr+"_q") |
|---|
| 955 | WAVE/Z iw = $(baseStr+"_i") |
|---|
| 956 | WAVE/Z sw = $(baseStr+"_s") |
|---|
| 957 | WAVE/Z resw = $(baseStr+"_res") |
|---|
| 958 | |
|---|
| 959 | if(WaveExists(qw) == 0) |
|---|
| 960 | Abort "q is missing" |
|---|
| 961 | endif |
|---|
| 962 | if(WaveExists(iw) == 0) |
|---|
| 963 | Abort "i is missing" |
|---|
| 964 | endif |
|---|
| 965 | if(WaveExists(sw) == 0) |
|---|
| 966 | Abort "s is missing" |
|---|
| 967 | endif |
|---|
| 968 | if(WaveExists(resw) == 0) |
|---|
| 969 | Abort "Resolution information is missing." |
|---|
| 970 | endif |
|---|
| 971 | |
|---|
| 972 | |
|---|
| 973 | // if (USANS) |
|---|
| 974 | // else (SANS is assumed) |
|---|
| 975 | // endif |
|---|
| 976 | NVAR/Z dQv = USANS_dQv // in current DF |
|---|
| 977 | if (NVAR_Exists(dQv)) |
|---|
| 978 | //USANS data, proceed |
|---|
| 979 | //Use the evil extra column for the resolution "information". Should probably switch to using slit_length in collimation. |
|---|
| 980 | Duplicate/O qw,dumWave |
|---|
| 981 | dumWave = dQv //written out as a positive value, since the column is identified by its label, dQl |
|---|
| 982 | |
|---|
| 983 | //Data |
|---|
| 984 | Wave nf.Q = qw |
|---|
| 985 | nf.unitsQ = "1/A" |
|---|
| 986 | Wave nf.I = iw |
|---|
| 987 | nf.unitsI = "1/cm" |
|---|
| 988 | Wave nf.Idev = sw |
|---|
| 989 | nf.unitsIdev = "1/cm" |
|---|
| 990 | // for slit-smeared USANS, set only a 4th column to -dQv |
|---|
| 991 | Wave nf.dQl = dumWave |
|---|
| 992 | nf.unitsdQl= "1/A" |
|---|
| 993 | |
|---|
| 994 | //AJJ to fix with sensible values |
|---|
| 995 | nf.run = "" |
|---|
| 996 | nf.nameSASinstrument = "NIST IGOR Procedures" |
|---|
| 997 | nf.SASnote = "" |
|---|
| 998 | // |
|---|
| 999 | nf.sample_ID = baseStr |
|---|
| 1000 | nf.title = baseStr |
|---|
| 1001 | nf.radiation = "neutron" |
|---|
| 1002 | //Do something with beamstop (rw[21]) |
|---|
| 1003 | nf.detector_name = "Re-written USANS data" |
|---|
| 1004 | |
|---|
| 1005 | nf.SASprocessnote = "Modified data written from folder "+baseStr+" on "+(date()+" "+time()) |
|---|
| 1006 | |
|---|
| 1007 | nf.nameSASProcess = "NIST IGOR" |
|---|
| 1008 | |
|---|
| 1009 | else |
|---|
| 1010 | //assume SANS data |
|---|
| 1011 | Duplicate/O qw qbar,sigQ,fs |
|---|
| 1012 | sigq = resw[p][0] |
|---|
| 1013 | qbar = resw[p][1] |
|---|
| 1014 | fs = resw[p][2] |
|---|
| 1015 | |
|---|
| 1016 | |
|---|
| 1017 | //Data |
|---|
| 1018 | Wave nf.Q = qw |
|---|
| 1019 | nf.unitsQ = "1/A" |
|---|
| 1020 | Wave nf.I = iw |
|---|
| 1021 | nf.unitsI = "1/cm" |
|---|
| 1022 | Wave nf.Idev = sw |
|---|
| 1023 | nf.unitsIdev = "1/cm" |
|---|
| 1024 | Wave nf.Qdev = sigQ |
|---|
| 1025 | nf.unitsQdev = "1/A" |
|---|
| 1026 | Wave nf.Qmean = qbar |
|---|
| 1027 | nf.unitsQmean = "1/A" |
|---|
| 1028 | Wave nf.Shadowfactor = fs |
|---|
| 1029 | nf.unitsShadowfactor = "none" |
|---|
| 1030 | |
|---|
| 1031 | |
|---|
| 1032 | //write out the standard header information |
|---|
| 1033 | //fprintf refnum,"FILE: %s\t\t CREATED: %s\r\n",textw[0],textw[1] |
|---|
| 1034 | |
|---|
| 1035 | //AJJ to fix with sensible values |
|---|
| 1036 | nf.run = "" |
|---|
| 1037 | nf.nameSASinstrument = "NIST IGOR Procedures" |
|---|
| 1038 | nf.SASnote = "" |
|---|
| 1039 | // |
|---|
| 1040 | nf.sample_ID = baseStr |
|---|
| 1041 | nf.title = baseStr |
|---|
| 1042 | nf.radiation = "neutron" |
|---|
| 1043 | //Do something with beamstop (rw[21]) |
|---|
| 1044 | nf.detector_name = "Re-written data" |
|---|
| 1045 | |
|---|
| 1046 | nf.SASprocessnote = "Modified data written from folder "+baseStr+" on "+(date()+" "+time()) |
|---|
| 1047 | |
|---|
| 1048 | nf.nameSASProcess = "NIST IGOR" |
|---|
| 1049 | |
|---|
| 1050 | endif |
|---|
| 1051 | |
|---|
| 1052 | |
|---|
| 1053 | if(dialog) |
|---|
| 1054 | PathInfo/S catPathName |
|---|
| 1055 | fullPath = DoSaveFileDialog("Save data as",fname=baseStr+".xml") |
|---|
| 1056 | If(cmpstr(fullPath,"")==0) |
|---|
| 1057 | //user cancel, don't write out a file |
|---|
| 1058 | Close/A |
|---|
| 1059 | Abort "no data file was written" |
|---|
| 1060 | Endif |
|---|
| 1061 | //Print "dialog fullpath = ",fullpath |
|---|
| 1062 | Endif |
|---|
| 1063 | |
|---|
| 1064 | |
|---|
| 1065 | writeNISTXML(fullpath,nf) |
|---|
| 1066 | //write confirmation of write operation to history area |
|---|
| 1067 | Print "XML File written: ", GetFileNameFromPathNoSemi(fullPath) |
|---|
| 1068 | KillWaves/Z tempShortProto |
|---|
| 1069 | |
|---|
| 1070 | SetDataFolder root: |
|---|
| 1071 | |
|---|
| 1072 | Return(0) |
|---|
| 1073 | End |
|---|
| 1074 | |
|---|
| 1075 | |
|---|
| 1076 | |
|---|
| 1077 | |
|---|
| 1078 | #else // if( Exists("XmlOpenFile") ) |
|---|
| 1079 | // No XMLutils XOP: provide dummy function so that IgorPro can compile dependent support code |
|---|
| 1080 | // FUNCTION LoadNISTXMLData(fileName,doPlot) |
|---|
| 1081 | // String fileName |
|---|
| 1082 | // Variable doPlot |
|---|
| 1083 | // Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1084 | // RETURN(-6) |
|---|
| 1085 | // END |
|---|
| 1086 | |
|---|
| 1087 | |
|---|
| 1088 | Function LoadNISTXMLData(filestr,outStr,doPlot,forceOverwrite) |
|---|
| 1089 | String filestr,outStr |
|---|
| 1090 | Variable doPlot,forceOverwrite |
|---|
| 1091 | |
|---|
| 1092 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1093 | return(-6) |
|---|
| 1094 | end |
|---|
| 1095 | |
|---|
| 1096 | Function/S GetXMLDataSetTitle(xmlDF,dsNum,[useFilename]) |
|---|
| 1097 | String xmlDF |
|---|
| 1098 | Variable dsNum |
|---|
| 1099 | Variable useFilename |
|---|
| 1100 | |
|---|
| 1101 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1102 | return("") |
|---|
| 1103 | end |
|---|
| 1104 | |
|---|
| 1105 | Function WriteNISTXML(fileName, NISTfile) |
|---|
| 1106 | String fileName, NISTfile |
|---|
| 1107 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1108 | RETURN(-6) |
|---|
| 1109 | End |
|---|
| 1110 | |
|---|
| 1111 | Function WriteXMLWaves_W_Protocol(type,fullpath,dialog) |
|---|
| 1112 | String type,fullpath |
|---|
| 1113 | Variable dialog //=1 will present dialog for name |
|---|
| 1114 | |
|---|
| 1115 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1116 | return(-6) |
|---|
| 1117 | end |
|---|
| 1118 | |
|---|
| 1119 | Function WriteNSORTedXMLFile(q3,i3,sig3,firstFileName,secondFileName,thirdFileName,fourthFileName,normTo,norm12,norm23,norm34,[res]) |
|---|
| 1120 | Wave q3,i3,sig3,res |
|---|
| 1121 | String firstFileName,secondFileName,thirdFileName,fourthFileName,normTo |
|---|
| 1122 | Variable norm12,norm23,norm34 |
|---|
| 1123 | |
|---|
| 1124 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1125 | return(-6) |
|---|
| 1126 | End |
|---|
| 1127 | |
|---|
| 1128 | Function ReWrite1DXMLData(folderStr) |
|---|
| 1129 | String folderStr |
|---|
| 1130 | |
|---|
| 1131 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1132 | return(-6) |
|---|
| 1133 | end |
|---|
| 1134 | |
|---|
| 1135 | Function SetMetadataFromASCHeader(fileStr,NISTfile) |
|---|
| 1136 | String fileStr |
|---|
| 1137 | Struct NISTXMLfile &NISTfile |
|---|
| 1138 | |
|---|
| 1139 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1140 | return(-6) |
|---|
| 1141 | end |
|---|
| 1142 | |
|---|
| 1143 | Function ConvertNISTtoNISTXML(fileStr) |
|---|
| 1144 | String fileStr |
|---|
| 1145 | |
|---|
| 1146 | Abort "XML function provided by XMLutils XOP is not available, get the XOP from : http://www.igorexchange.com/project/XMLutils (see http://www.smallangles.net/wgwiki/index.php/cansas1d_binding_IgorPro for details)" |
|---|
| 1147 | return(-6) |
|---|
| 1148 | end |
|---|
| 1149 | |
|---|
| 1150 | |
|---|
| 1151 | #endif |
|---|
| 1152 | |
|---|
| 1153 | //AJJ 12/5/08 |
|---|
| 1154 | |
|---|
| 1155 | //Define struct for file contents |
|---|
| 1156 | Structure NISTXMLfile |
|---|
| 1157 | // string filename |
|---|
| 1158 | string Run |
|---|
| 1159 | string title |
|---|
| 1160 | |
|---|
| 1161 | //<SASdata> |
|---|
| 1162 | Wave Q,I,Idev,Qdev,Qmean,Shadowfactor,dQl |
|---|
| 1163 | string unitsQ,unitsI,unitsIdev,unitsQdev,unitsQmean,unitsShadowfactor,unitsdQl |
|---|
| 1164 | |
|---|
| 1165 | // Variable flux_monitor |
|---|
| 1166 | // string Q_resolution |
|---|
| 1167 | |
|---|
| 1168 | //<SASsample> |
|---|
| 1169 | string sample_ID |
|---|
| 1170 | variable sample_thickness |
|---|
| 1171 | string unitssample_thickness |
|---|
| 1172 | variable sample_transmission |
|---|
| 1173 | |
|---|
| 1174 | //SASinstrument |
|---|
| 1175 | string nameSASinstrument |
|---|
| 1176 | // SASinstrument/SASsource |
|---|
| 1177 | string radiation |
|---|
| 1178 | // string beam_shape |
|---|
| 1179 | variable wavelength |
|---|
| 1180 | string unitswavelength |
|---|
| 1181 | variable wavelength_spread |
|---|
| 1182 | string unitswavelength_spread |
|---|
| 1183 | |
|---|
| 1184 | //<SAScollimation> |
|---|
| 1185 | // variable collimation_length |
|---|
| 1186 | // string unitscollimation_length |
|---|
| 1187 | variable source_aperture |
|---|
| 1188 | string unitssource_aperture |
|---|
| 1189 | string typesource_aperture |
|---|
| 1190 | variable sample_aperture |
|---|
| 1191 | string unitssample_aperture |
|---|
| 1192 | string typesample_aperture |
|---|
| 1193 | |
|---|
| 1194 | //SASdetector <SASdetector> |
|---|
| 1195 | string detector_name |
|---|
| 1196 | variable offset_angle |
|---|
| 1197 | string unitsoffset_angle |
|---|
| 1198 | variable SDD |
|---|
| 1199 | string unitsSDD |
|---|
| 1200 | variable beamcenter_X |
|---|
| 1201 | string unitsbeamcenter_X |
|---|
| 1202 | variable beamcenter_Y |
|---|
| 1203 | string unitsbeamcenter_Y |
|---|
| 1204 | // variable pixel_sizeX |
|---|
| 1205 | // string unitspixel_sizeX |
|---|
| 1206 | // variable pixel_sizeY |
|---|
| 1207 | // string unitspixel_sizeY |
|---|
| 1208 | // string detectortype |
|---|
| 1209 | |
|---|
| 1210 | // <SASprocess name="NCNR-IGOR"> |
|---|
| 1211 | string nameSASprocess |
|---|
| 1212 | string SASprocessnote |
|---|
| 1213 | // string SASprocessdate |
|---|
| 1214 | // string average_type |
|---|
| 1215 | // string SAM_file |
|---|
| 1216 | // string BKD_file |
|---|
| 1217 | // string EMP_file |
|---|
| 1218 | // string DIV_file |
|---|
| 1219 | // string MASK_file |
|---|
| 1220 | // string ABS_parameters |
|---|
| 1221 | // variable TSTAND |
|---|
| 1222 | // variable DSTAND |
|---|
| 1223 | // string unitsDSTAND |
|---|
| 1224 | // variable IZERO |
|---|
| 1225 | // variable XSECT |
|---|
| 1226 | // string unitsXSECT |
|---|
| 1227 | string SASnote |
|---|
| 1228 | Endstructure |
|---|
| 1229 | |
|---|
| 1230 | // if( Exists("XmlOpenFile") |
|---|
| 1231 | //Needed to test whether file is XML. The load routine will then either give an error if XMLutils is not present or load the file if it is. |
|---|
| 1232 | Function isXML(filestr) |
|---|
| 1233 | String filestr |
|---|
| 1234 | |
|---|
| 1235 | String line |
|---|
| 1236 | Variable fileref |
|---|
| 1237 | |
|---|
| 1238 | Open/R/Z fileref as filestr |
|---|
| 1239 | FReadLine fileref, line |
|---|
| 1240 | Close fileref |
|---|
| 1241 | |
|---|
| 1242 | //Hopefully this will distinguish between other formats and the XML |
|---|
| 1243 | //Previous string match would match normal files that have a .xml file as their progenitor... |
|---|
| 1244 | return GrepString(line, "(?iU).*\<.*xml.*") |
|---|
| 1245 | |
|---|
| 1246 | end |
|---|
