source: sans/Dev/trunk/NCNR_User_Procedures/Common/Packages/PlotManager/PlotUtilsMacro_v40.ipf @ 912

Last change on this file since 912 was 912, checked in by srkline, 10 years ago

Added Auto-Fit (Batch fitting) to the Macros menu as a beta item

Updated broken links in Model_Docs

Added Auto-Fit help to the Analysis Help file as a new package

Updated the current version to 7.20, a new release for the web site

File size: 50.2 KB
Line 
1#pragma rtGlobals=1             // Use modern global access method.
2#pragma version=4.00
3#pragma IgorVersion=6.1
4
5// This is to be used with the Analysis packages ONLY
6// there are a number of utility procedures here for loading
7// data and generating valid lists of data files that are
8// directly copied from the Reduction package
9// -- There WILL be name conflicts if you mix the two...
10//
11// 16 DEC 05 SRK
12// prepended function names with A_ to tag them for the
13// "A"nalysis parckage, though nearly all are duplicate procedures
14// so there will be no overlap with the reduction package
15//
16//
17// these extra procedures are used by:
18// Linearized fits (duplicated in Reduction - will need to handle gently)
19// Invariant (no overlap with reduction)
20//
21// SRK MAR 2005
22
23// create a KW=string; of model=coef correspondence as the models are plotted, rather than
24// some other hard-wired solution
25Function AddModelToStrings(funcStr,coefStr,paramStr,suffix)
26        String funcStr,coefStr,paramStr,suffix
27       
28        if(exists("root:Packages:NIST:paramKWStr")==0)
29                String/G root:Packages:NIST:coefKWStr=""
30                String/G root:Packages:NIST:paramKWStr=""
31                String/G root:Packages:NIST:suffixKWStr=""
32        endif
33        SVAR coefKWStr = root:Packages:NIST:coefKWStr
34        SVAR paramKWStr = root:Packages:NIST:paramKWStr
35        SVAR suffixKWStr = root:Packages:NIST:suffixKWStr
36        coefKWStr += funcStr+"="+coefStr+";"
37        paramKWStr += funcStr+"="+paramStr+";"
38        suffixKWStr += funcStr+"="+suffix+";"
39end
40
41// always pass this the function string
42//
43// this is new in the 2009 release, so make sure that it generates itself as needed.
44// Two options: (1) search and construct as needed, ask for intervention if I need it.
45// (2) since I'm passed the function, try to replot it to re-run the function
46// to fill in the strings. (Being sure to save the coefficients)
47//
48// using method (1) to fill in what I need with no intervention
49//
50Function/S getFunctionParams(funcStr)
51        String funcStr
52
53        String paramStr=""
54        SVAR/Z listStr=root:Packages:NIST:paramKWStr
55
56        if(SVAR_Exists(listStr))
57                paramStr = StringByKey(funcStr, listStr  ,"=",";",0)
58                if(strlen(paramStr)!=0)                 //will drop out of loop if string can't be found
59                        return(paramStr)
60                endif
61        else    //global string does not exist, create it and fill it in
62                Variable/G root:Pacakges:NIST:gReconstructStrings = 1                   //coefficients old style and must be rebuilt too
63                String/G root:Packages:NIST:paramKWStr=""
64                SVAR/Z listStr=root:Packages:NIST:paramKWStr
65        endif   
66       
67        // find everything to rebuild only if the model has been plotted (if so, coefficients will exist)
68        String coef = getFunctionCoef(funcStr)
69        if(strlen(coef)==0)
70                //model not plotted, don't reconstruct, return null string
71                return(paramStr)
72        endif
73       
74        ///// NEED TO BE IN PROPER DATA FOLDER FOR SMEARED FUNCTIONS
75        // FUNCTION POP MENU WILL LOOK IN ROOT OTHERWISE
76        ControlInfo/W=WrapperPanel popup_0
77        String folderStr=S_Value
78        // this if/else/endif should not ever return an error alert     
79        // it should simply set the data folder properly       
80        if(Stringmatch(funcStr,"Smear*"))               //simple test for smeared function
81                if(DataFolderExists("root:"+folderStr))
82                        SetDataFolder $("root:"+folderStr)
83                else
84                        SetDataFolder root:
85                endif
86        else
87                SetDataFolder root:
88        endif
89       
90        // model was plotted, find the suffix to fill in the parameter wave
91        SVAR suffListStr=root:Packages:NIST:suffixKWStr
92        String suffix = StringByKey(coef, suffListStr  ,"=",";",0)
93       
94        String paramWave = WaveList("*par*"+suffix,"","TEXT:1")         //should be one wave name, no trailing semicolon
95        listStr += funcStr+"="+paramWave+";"
96
97        //now look it up again
98        paramStr = StringByKey(funcStr, listStr  ,"=",";",0)
99
100        return(paramStr)
101End
102
103// always pass this the function string
104//
105Function/S getFunctionCoef(funcStr)
106        String funcStr
107
108        SVAR listStr=root:Packages:NIST:coefKWStr
109        String coefStr = StringByKey(funcStr, listStr  ,"=",";",0)
110
111        return(coefStr)
112End
113
114// always pass this the Function string
115//
116// does NOT return the leading "_" as part of the suffix
117// may need to set the string correctly - so lost of messing around for back-compatibility
118Function/S getModelSuffix(funcStr)
119        String funcStr
120
121        SVAR listStr=root:Packages:NIST:suffixKWStr
122        String suffixStr = StringByKey(funcStr, listStr  ,"=",";",0)
123
124        if(strlen(suffixStr) !=0)               //found it, get out
125                return(suffixStr)
126        endif
127       
128        // was the model plotted?
129        String coef = getFunctionCoef(funcStr)
130        if(strlen(coef)==0)             
131                //nothing plotted
132                return("")
133        else
134                //plotted, find the coeff
135                String suffix = StringByKey(coef, ListStr  ,"=",";",0)
136       
137                // add to the suffix list in the new style, if it was found
138                if(strlen(suffix) !=0)
139                        listStr += funcStr+"="+suffix+";"
140                endif
141                return(suffix)
142        endif
143       
144        return("")
145End
146
147
148/////////////////////////////
149
150
151
152
153// loads a 1-d (ascii) datafile and plots the data
154// will overwrite existing data if user is OK with this
155// - multiple datasets can be automatically plotted on the same graph
156//
157//substantially easier to write this as a Proc rather than a function...
158
159//
160Proc A_LoadOneDData()
161        A_LoadOneDDataWithName("",1)            //will prompt for file and plot data
162End
163
164// load the data specified by fileStr (a full path:name)
165// and plots if doPlot==1
166// if fileStr is null, a dialog is presented to select the file
167//
168// 3 cases (if)
169// - 3 columns = QIS, no resolution
170// - 6 columns = QSIG, SANS w/resolution
171// - 5 columns = old-style desmeared USANS data (from VAX)
172//
173// This loader replaces the A_LoadOneDData() which was almost completely duplicated code
174//
175//new version, 19JUN07 that loads each data set into a separate data folder
176// the data folder is given the "base name" of the data file as it's loaded
177//
178
179Proc A_LoadOneDDataWithName(fileStr,doPlot)
180        String fileStr
181        Variable doPlot
182       
183        A_LoadOneDDataToName(fileStr,"",doPlot,0)
184
185End
186
187
188///Function that takes output name as well as input
189Proc A_LoadOneDDataToName(fileStr,outStr,doPlot,forceOverwrite)
190        String fileStr, outstr
191        Variable doPlot,forceOverwrite
192       
193        Variable rr,gg,bb,refnum,dQv
194        String w0,w1,w2,n0,n1,n2
195        String w3,w4,w5,n3,n4,n5                        //3 extra waves to load
196        SetDataFolder root:             //build sub-folders for each data set under root
197
198// I can't see that we need to find dQv here.   
199//      if (exists("root:Packages:NIST:USANS:Globals:MainPanel:gDQv"))
200//              //Running from USANS reduction
201//              Variable dQv = root:Packages:NIST:USANS:Globals:MainPanel:gDQv
202//      endif
203//      if(exists("root:Packages:NIST:USANS_dQv"))
204//              //Running from SANS Analysis
205//              Variable dQv = root:Packages:NIST:USANS_dQv
206//      else
207//              //running from somewhere else, probably SANS Reduction, which uses common loaders
208//              Variable/G root:Packages:NIST:USANS_dQv = 0.117
209//      endif
210        String angst = StrVarOrDefault("root:Packages:NIST:gAngstStr", "A" )
211
212        // if no fileStr passed in, display dialog now
213        if (cmpStr(fileStr,"") == 0)
214                fileStr = DoOpenFileDialog("Select a data file to load")
215                if (cmpstr(fileStr,"") == 0)
216                        String/G root:Packages:NIST:gLastFileName = ""
217                        return          //get out if no file selected
218                endif
219        endif
220
221        if (isXML(fileStr) == 1)
222                LoadNISTXMLData(fileStr,outstr,doPlot,forceOverwrite)
223        else           
224                //Load the waves, using default waveX names
225                //if no path or file is specified for LoadWave, the default Mac open dialog will appear
226                LoadWave/G/D/A/Q fileStr
227                String fileNamePath = S_Path+S_fileName
228//              String basestr = ParseFilePath(3,ParseFilePath(5,fileNamePath,":",0,0),":",0,0)
229
230                String basestr
231                if (!cmpstr(outstr, ""))                //Outstr = "", cmpstr returns 0
232//                      enforce a short enough name here to keep Igor objects < 31 chars
233                        baseStr = ShortFileNameString(CleanupName(S_fileName,0))
234                        baseStr = CleanupName(baseStr,0)                //in case the user added odd characters
235                        //baseStr = CleanupName(S_fileName,0)
236                else
237                        baseStr = outstr                        //for output, hopefully correct length as passed in
238                endif
239       
240//              print "basestr :"+basestr
241                String fileName =  ParseFilePath(0,ParseFilePath(5,filestr,":",0,0),":",1,0)
242//              print "filename :"+filename
243                Variable numCols = V_flag
244               
245                //changes JIL to allow 2-column data to be read in, "faking" a 3rd column of errors
246                if(numCols==2) //no errors
247                        n1 = StringFromList(1, S_waveNames ,";" )
248                        Duplicate/O $("root:"+n1), errorTmp
249                        errorTmp = 0.01*(errorTmp)+ 0.03*sqrt(errorTmp)
250                        S_waveNames+="errorTmp;"
251                        numCols=3
252                endif
253               
254                if(numCols==3)          //simple 3-column data with no resolution information
255                       
256                        // put the names of the three loaded waves into local names
257                        n0 = StringFromList(0, S_waveNames ,";" )
258                        n1 = StringFromList(1, S_waveNames ,";" )
259                        n2 = StringFromList(2, S_waveNames ,";" )
260                       
261                        //remove the semicolon AND period from files from the VAX
262                        w0 = CleanupName((basestr + "_q"),0)
263                        w1 = CleanupName((basestr + "_i"),0)
264                        w2 = CleanupName((basestr + "_s"),0)
265                       
266                        //String baseStr=w1[0,strlen(w1)-3]
267                        if(DataFolderExists("root:"+baseStr))
268                                if (!forceOverwrite)
269                                        DoAlert 1,"The file "+S_filename+" has already been loaded. Do you want to load the new data file, overwriting the data in memory?"
270                                        if(V_flag==2)   //user selected No, don't load the data
271                                                SetDataFolder root:
272                                                KillWaves $n0,$n1,$n2           // kill the default waveX that were loaded
273                                                if(DataFolderExists("root:Packages:NIST"))
274                                                        String/G root:Packages:NIST:gLastFileName = filename
275                                                endif
276                                                return  //quits the macro
277                                        endif
278                                endif
279                                SetDataFolder $("root:"+baseStr)
280                        else
281                                NewDataFolder/S $("root:"+baseStr)
282                        endif
283
284                       
285                        ////overwrite the existing data, if it exists
286                        Duplicate/O $("root:"+n0), $w0
287                        Duplicate/O $("root:"+n1), $w1
288                        Duplicate/O $("root:"+n2), $w2
289       
290                        // no resolution matrix to make
291       
292                        SetScale d,0,0,"1/A",$w0
293                        SetScale d,0,0,"1/cm",$w1
294                       
295                endif           //3-col data
296               
297                if(numCols == 6)                //6-column SANS or USANS data that has resolution information
298                       
299                        // put the names of the (default named) loaded waves into local names
300                        n0 = StringFromList(0, S_waveNames ,";" )
301                        n1 = StringFromList(1, S_waveNames ,";" )
302                        n2 = StringFromList(2, S_waveNames ,";" )
303                        n3 = StringFromList(3, S_waveNames ,";" )
304                        n4 = StringFromList(4, S_waveNames ,";" )
305                        n5 = StringFromList(5, S_waveNames ,";" )
306                       
307                        //remove the semicolon AND period from files from the VAX
308                        w0 = CleanupName((basestr + "_q"),0)
309                        w1 = CleanupName((basestr + "_i"),0)
310                        w2 = CleanupName((basestr + "_s"),0)
311                        w3 = CleanupName((basestr + "sq"),0)
312                        w4 = CleanupName((basestr + "qb"),0)
313                        w5 = CleanupName((basestr + "fs"),0)
314                       
315                        //String baseStr=w1[0,strlen(w1)-3]
316                        if(DataFolderExists("root:"+baseStr))
317                                if(!forceOverwrite)
318                                        DoAlert 1,"The file "+S_filename+" has already been loaded. Do you want to load the new data file, overwriting the data in memory?"
319                                        if(V_flag==2)   //user selected No, don't load the data
320                                                SetDataFolder root:
321                                                KillWaves $n0,$n1,$n2,$n3,$n4,$n5               // kill the default waveX that were loaded
322                                                if(DataFolderExists("root:Packages:NIST"))
323                                                        String/G root:Packages:NIST:gLastFileName = filename
324                                                endif
325                                                return          //quits the macro
326                                        endif
327                                endif
328                                SetDataFolder $("root:"+baseStr)
329                        else
330                                NewDataFolder/S $("root:"+baseStr)
331                        endif
332
333
334
335       
336        ////overwrite the existing data, if it exists
337                        Duplicate/O $("root:"+n0), $w0
338                        Duplicate/O $("root:"+n1), $w1
339                        Duplicate/O $("root:"+n2), $w2
340                        Duplicate/O $("root:"+n3), $w3
341                        Duplicate/O $("root:"+n4), $w4
342                        Duplicate/O $("root:"+n5), $w5
343       
344                        // need to switch based on SANS/USANS
345                        if (isSANSResolution($w3[0]))           //checks to see if the first point of the wave is <0]
346                                // make a resolution matrix for SANS data
347                                Variable np=numpnts($w0)
348                                Make/D/O/N=(np,4) $(baseStr+"_res")
349                               
350                                $(baseStr+"_res")[][0] = $w3[p]         //sigQ
351                                $(baseStr+"_res")[][1] = $w4[p]         //qBar
352                                $(baseStr+"_res")[][2] = $w5[p]         //fShad
353                                $(baseStr+"_res")[][3] = $w0[p]         //Qvalues
354                        else
355                                //the data is USANS data
356                                // marix calculation here, but for now, just copy the waves
357                                //$(baseStr+"_res")[][0] = $w3[p]               //sigQ
358                                //$(baseStr+"_res")[][1] = $w4[p]               //qBar
359                                //$(baseStr+"_res")[][2] = $w5[p]               //fShad
360                                //$(baseStr+"_res")[][3] = $w0[p]               //Qvalues
361                                dQv = -$w3[0]
362                               
363                                USANS_CalcWeights(baseStr,dQv)
364                               
365                        endif
366                        Killwaves/Z $w3,$w4,$w5                 //get rid of the resolution waves that are in the matrix
367       
368                        SetScale d,0,0,"1/A",$w0
369                        SetScale d,0,0,"1/cm",$w1
370               
371                endif   //6-col data
372       
373                // Load ORNL data from Heller program
374                if(numCols == 4)                //4-column SANS or USANS data that has resolution information
375                       
376                        // put the names of the (default named) loaded waves into local names
377                        n0 = StringFromList(0, S_waveNames ,";" )
378                        n1 = StringFromList(1, S_waveNames ,";" )
379                        n2 = StringFromList(2, S_waveNames ,";" )
380                        n3 = StringFromList(3, S_waveNames ,";" )
381                       
382                        //remove the semicolon AND period from files from the VAX
383                        w0 = CleanupName((basestr + "_q"),0)
384                        w1 = CleanupName((basestr + "_i"),0)
385                        w2 = CleanupName((basestr + "_s"),0)
386                        w3 = CleanupName((basestr + "sq"),0)
387                        w4 = CleanupName((basestr + "qb"),0)
388                        w5 = CleanupName((basestr + "fs"),0)
389       
390                       
391                        //String baseStr=w1[0,strlen(w1)-3]
392                        if(DataFolderExists("root:"+baseStr))
393                                if(!forceOverwrite)
394                                        DoAlert 1,"The file "+S_filename+" has already been loaded. Do you want to load the new data file, overwriting the data in memory?"
395                                        if(V_flag==2)   //user selected No, don't load the data
396                                                SetDataFolder root:
397                                                KillWaves $n0,$n1,$n2,$n3               // kill the default waveX that were loaded
398                                                if(DataFolderExists("root:Packages:NIST"))
399                                                        String/G root:Packages:NIST:gLastFileName = filename
400                                                endif
401                                                return          //quits the macro
402                                        endif
403                                endif
404                                SetDataFolder $("root:"+baseStr)
405                        else
406                                NewDataFolder/S $("root:"+baseStr)
407                        endif
408       
409
410
411       
412        ////overwrite the existing data, if it exists
413                        Duplicate/O $("root:"+n0), $w0
414                        Duplicate/O $("root:"+n1), $w1
415                        Duplicate/O $("root:"+n2), $w2
416                        Duplicate/O $("root:"+n3), $w3
417                        Duplicate/O $("root:"+n0), $w4 // Set qb wave to nominal measured Q values
418                        Duplicate/O $("root:"+n0), $w5 // Make wave of appropriate length
419                        $w4 = $w0
420                        $w5 = 1                                           //  Set all shadowfactor to 1
421       
422                        // need to switch based on SANS/USANS
423                        if (isSANSResolution($w3[0]))           //checks to see if the first point of the wave is <0]
424                                // make a resolution matrix for SANS data
425                                Variable np=numpnts($w0)
426                                Make/D/O/N=(np,4) $(baseStr+"_res")
427                               
428                                $(baseStr+"_res")[][0] = $w3[p]         //sigQ
429                                $(baseStr+"_res")[][1] = $w4[p]         //qBar
430                                $(baseStr+"_res")[][2] = $w5[p]         //fShad
431                                $(baseStr+"_res")[][3] = $w0[p]         //Qvalues
432                        else
433                                //the data is USANS data
434                                // marix calculation here, but for now, just copy the waves
435                                //$(baseStr+"_res")[][0] = $w3[p]               //sigQ
436                                //$(baseStr+"_res")[][1] = $w4[p]               //qBar
437                                //$(baseStr+"_res")[][2] = $w5[p]               //fShad
438                                //$(baseStr+"_res")[][3] = $w0[p]               //Qvalues
439                                dQv = -$w3[0]
440                               
441                                USANS_CalcWeights(baseStr,dQv)
442                               
443                        endif
444                        Killwaves/Z $w3,$w4,$w5                 //get rid of the resolution waves that are in the matrix
445       
446                        SetScale d,0,0,"1/A",$w0
447                        SetScale d,0,0,"1/cm",$w1
448               
449                endif   //4-col data
450       
451       
452                if(numCols==5)          //this is the "old-style" VAX desmeared data format
453                       
454                        // put the names of the three loaded waves into local names
455                        n0 = StringFromList(0, S_waveNames ,";" )
456                        n1 = StringFromList(1, S_waveNames ,";" )
457                        n2 = StringFromList(2, S_waveNames ,";" )
458                        n3 = StringFromList(3, S_waveNames ,";" )
459                        n4 = StringFromList(4, S_waveNames ,";" )
460                       
461                       
462                        //remove the semicolon AND period from files from the VAX
463                        w0 = CleanupName((basestr+"_q"),0)
464                        w1 = CleanupName((basestr+"_i"),0)
465                        w2 = CleanupName((basestr+"_s"),0)
466                        w3 = CleanupName((basestr+"_ism"),0)
467                        w4 = CleanupName((basestr+"_fit_ism"),0)
468                       
469                        //String baseStr=w1[0,strlen(w1)-3]
470                        if(DataFolderExists("root:"+baseStr))
471                                if(!forceOverwrite)
472                                        DoAlert 1,"The file "+S_filename+" has already been loaded. Do you want to load the new data file, overwriting the data in memory?"
473                                        if(V_flag==2)   //user selected No, don't load the data
474                                                KillWaves $n0,$n1,$n2,$n3,$n4,$n5               // kill the default waveX that were loaded
475                                                if(DataFolderExists("root:Packages:NIST"))
476                                                        String/G root:Packages:NIST:gLastFileName = filename
477                                                endif           //set the last file loaded to the one NOT loaded
478                                                return          //quits the macro
479                                        endif
480                                endif
481                                SetDataFolder $("root:"+baseStr)
482                        else
483                                NewDataFolder/S $("root:"+baseStr)
484                        endif
485                       
486                        ////overwrite the existing data, if it exists   
487                        Duplicate/O $("root:"+n0), $w0
488                        Duplicate/O $("root:"+n1), $w1
489                        Duplicate/O $("root:"+n2), $w2
490                        Duplicate/O $("root:"+n3), $w3
491                        Duplicate/O $("root:"+n4), $w4
492                       
493                        // no resolution matrix
494                endif           //5-col data
495
496                //////
497                if(DataFolderExists("root:Packages:NIST"))
498                        String/G root:Packages:NIST:gLastFileName = filename
499                endif
500       
501               
502                //plot if desired
503                if(doPlot)
504                        Print GetDataFolder(1)
505                       
506                        // assign colors randomly
507                        rr = abs(trunc(enoise(65535)))
508                        gg = abs(trunc(enoise(65535)))
509                        bb = abs(trunc(enoise(65535)))
510                       
511                        // if target window is a graph, and user wants to append, do so
512                   DoWindow/B Plot_Manager
513                        if(WinType("") == 1)
514                                DoAlert 1,"Do you want to append this data to the current graph?"
515                               
516                               
517                                if(V_Flag == 1)
518                                        AppendToGraph $w1 vs $w0
519                                        ModifyGraph mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1) =(rr,gg,bb),tickUnit=1
520                                        ErrorBars/T=0 $w1 Y,wave=($w2,$w2)
521                                        ModifyGraph tickUnit(left)=1
522                                else
523                                //new graph
524                                        SetDataFolder $("root:"+baseStr)                //sometimes I end up back in root: here, and I can't figure out why!
525                                        Display $w1 vs $w0
526                                        ModifyGraph log=1,mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1)=(rr,gg,bb),tickUnit=1
527                                        ModifyGraph grid=1,mirror=2,standoff=0
528                                        ErrorBars/T=0 $w1 Y,wave=($w2,$w2)
529                                        ModifyGraph tickUnit(left)=1
530                                        Label left "I(q)"
531                                        Label bottom "q ("+angst+"\\S-1\\M)"
532                                        Legend
533                                endif
534                        else
535                        // graph window was not target, make new one
536                                Display $w1 vs $w0
537                                ModifyGraph log=1,mode($w1)=3,marker($w1)=19,msize($w1)=2,rgb($w1)=(rr,gg,bb),tickUnit=1
538                                ModifyGraph grid=1,mirror=2,standoff=0
539                                ErrorBars/T=0 $w1 Y,wave=($w2,$w2)
540                                ModifyGraph tickUnit(left)=1
541                                Label left "I(q)"
542                                Label bottom "q ("+angst+"\\S-1\\M)"
543                                Legend
544                        endif
545                endif
546                       
547                //go back to the root folder and clean up before leaving
548                SetDataFolder root:
549                KillWaves/Z $n0,$n1,$n2,$n3,$n4,$n5
550               
551        endif
552End
553
554
555//procedure for loading NSE data in the format (4-columns)
556// qvals - time - I(q,t) - dI(q,t)
557//
558//
559// this does NOT load the data into separate folders...
560//
561Proc A_LoadNSEData()
562        A_LoadNSEDataWithName("",1)
563End
564
565Proc A_LoadNSEDataWithName(fileStr,doPlot)
566
567        //Load the waves, using default waveX names
568        //if no path or file is specified for LoadWave, the default Mac open dialog will appear
569        LoadWave/G/D/A  fileStr
570        String filename = S_fileName
571       
572        String w0,w1,w2,n0,n1,n2,wt,w3,n3
573        Variable rr,gg,bb
574       
575        // put the names of the three loaded waves into local names
576        n0 = StringFromList(0, S_waveNames ,";" )
577        n1 = StringFromList(1, S_waveNames ,";" )
578        n2 = StringFromList(2, S_waveNames ,";" )
579        n3 = StringFromList(3, S_waveNames ,";" )
580       
581       
582        //remove the semicolon AND period from files from the VAX
583        w0 = CleanupName(("qvals_"+S_fileName),0)
584        w1 = CleanupName(("time_"+S_fileName),0)
585        w2 = CleanupName(("iqt_"+S_fileName),0)
586        w3 = CleanupName(("iqterr_"+S_fileName),0)
587       
588        if(exists(w0) !=0)
589                DoAlert 0,"This file has already been loaded. Use Append to Graph..."
590                KillWaves $n0,$n1,$n2           // kill the default waveX that were loaded
591                return
592        endif
593       
594        // Rename to give nice names
595        Rename $n0, $w0
596        Rename $n1, $w1
597        Rename $n2, $w2
598        Rename $n3, $w3
599               
600        if(doPlot)
601                // assign colors randomly
602                rr = abs(trunc(enoise(65535)))
603                gg = abs(trunc(enoise(65535)))
604                bb = abs(trunc(enoise(65535)))
605               
606                // if target window is a graph, and user wants to append, do so
607                if(WinType("") == 1)
608                        DoAlert 1,"Do you want to append this data to the current graph?"
609                        if(V_Flag == 1)
610                                AppendToGraph $w2 vs $w1
611                                ModifyGraph mode($w2)=3,marker($w2)=29,msize($w2)=2,rgb($w2) =(rr,gg,bb),grid=1,mirror=2,tickUnit=1
612                                ErrorBars/T=0 $w2 Y,wave=($w3,$w3)
613                        else
614                        //new graph
615                                Display $w2 vs $w1
616                                ModifyGraph standoff=0,mode($w2)=3,marker($w2)=29,msize($w2)=2,rgb($w2)=(rr,gg,bb),grid=1,mirror=2,tickUnit=1
617                                ErrorBars/T=0 $w2 Y,wave=($w3,$w3)
618                                Legend
619                        endif
620                else
621                // graph window was not target, make new one
622                        Display $w2 vs $w1
623                        ModifyGraph standoff=0,mode($w2)=3,marker($w2)=29,msize($w2)=2,rgb($w2)=(rr,gg,bb),grid=1,mirror=2,tickUnit=1
624                        ErrorBars/T=0 $w2 Y,wave=($w3,$w3)
625                        Legend
626                endif
627        endif //doPlot         
628
629End
630
631//procedure for loading desmeared USANS data in the format (5-columns)
632// qvals - I(q) - sig I - Ism(q) - fitted Ism(q)
633//no weighting wave is created (not needed in IGOR 4)
634//
635// not really ever used...
636//
637Proc A_LoadUSANSData()
638
639        //Load the waves, using default waveX names
640        //if no path or file is specified for LoadWave, the default Mac open dialog will appear
641        LoadWave/G/D/A
642   String filename = S_fileName
643       
644        String w0,w1,w2,n0,n1,n2,w3,n3,w4,n4
645        Variable rr,gg,bb
646       
647        // put the names of the three loaded waves into local names
648        n0 = StringFromList(0, S_waveNames ,";" )
649        n1 = StringFromList(1, S_waveNames ,";" )
650        n2 = StringFromList(2, S_waveNames ,";" )
651        n3 = StringFromList(3, S_waveNames ,";" )
652        n4 = StringFromList(4, S_waveNames ,";" )
653       
654       
655        //remove the semicolon AND period from files from the VAX
656        w0 = CleanupName((S_fileName+"_q"),0)
657        w1 = CleanupName((S_fileName+"_i"),0)
658        w2 = CleanupName((S_fileName+"_s"),0)
659        w3 = CleanupName((S_fileName+"_ism"),0)
660        w4 = CleanupName((S_fileName+"_fit_ism"),0)
661       
662        if(exists(w0) !=0)              //the wave already exists
663                DoAlert 1,"This file "+S_filename+" has already been loaded. Do you want to load the new data file, overwriting the data in memory?"
664                if(V_flag==2)   //user selected No
665                        KillWaves $n0,$n1,$n2,$n3,$n4           // kill the default waveX that were loaded
666                        if(DataFolderExists("root:Packages:NIST"))
667                                String/G root:Packages:NIST:gLastFileName = filename
668                        endif           //set the last file loaded to the one NOT loaded
669                        return          //quits the macro
670                endif
671        endif
672       
673        ////overwrite the existing data, if it exists
674        Duplicate/O $n0, $w0
675        Duplicate/O $n1, $w1
676        Duplicate/O $n2, $w2
677        Duplicate/O $n3, $w3
678        Duplicate/O $n4, $w4
679        KillWaves $n0,$n1,$n2,$n3,$n4
680       
681        if(DataFolderExists("root:Packages:NIST"))
682                String/G root:Packages:NIST:gLastFileName = filename
683        endif
684               
685        // assign colors randomly
686        rr = abs(trunc(enoise(65535)))
687        gg = abs(trunc(enoise(65535)))
688        bb = abs(trunc(enoise(65535)))
689       
690                // if target window is a graph, and user wants to append, do so
691        if(WinType("") == 1)
692                DoAlert 1,"Do you want to append this data to the current graph?"
693                if(V_Flag == 1)
694                        AppendToGraph $w1 vs $w0
695                        ModifyGraph mode=3,marker=29,msize=2,rgb ($w1) =(rr,gg,bb),tickUnit=1,grid=1,mirror=2
696                        ErrorBars/T=0 $w1 Y,wave=($w2,$w2)
697                else
698                //new graph
699                        Display $w1 vs $w0
700                        ModifyGraph log=1,mode=3,marker=29,msize=2,rgb=(rr,gg,bb),tickUnit=1,grid=1,mirror=2
701                        ErrorBars/T=0 $w1 Y,wave=($w2,$w2)
702                        Legend
703                endif
704        else
705        // graph window was not target, make new one
706                Display $w1 vs $w0
707                ModifyGraph log=1,mode=3,marker=29,msize=2,rgb=(rr,gg,bb),tickUnit=1,grid=1,mirror=2
708                ErrorBars/T=0 $w1 Y,wave=($w2,$w2)
709                Legend
710        endif
711               
712End
713
714
715//// Extra "Utility Procedures"
716// to pick path, get a list of data files, and make sure that a valid filename
717// is passed to LoadOneDDataWithName()
718//
719
720//prompts user to choose the local folder that contains the SANS Data
721//only one folder can be used, and its path is catPathName (and is a NAME, not a string)
722//this will overwrite the path selection
723//returns 1 if no path selected as error condition
724Function A_PickPath()
725       
726        //set the global string to the selected pathname
727        NewPath/O/M="pick the SANS data folder" catPathName
728        PathInfo/S catPathName
729        String dum = S_path
730        String alertStr = ""
731        alertStr = "You must set the path to Charlotte through a Mapped Network Drive, not through the Network Neighborhood"
732        //alertStr += "  Please see the manual for details."
733        if (V_flag == 0)
734                //path does not exist - no folder selected
735                String/G root:Packages:NIST:gCatPathStr = "no folder selected"
736                return(1)
737        else
738                //set the global to the path (as a string)
739                // need 4 \ since it is the escape character
740                if(cmpstr("\\\\",dum[0,1])==0)  //Windoze user going through network neighborhood
741                        DoAlert 0,alertStr
742                        KillPath catPathName
743                        return(1)
744                endif
745                String/G root:Packages:NIST:gCatPathStr = dum
746                return(0)               //no error
747        endif
748End
749
750//Function attempts to find valid filename from partial name that has been stripped of
751//the VAX version number. The partial name is tried first
752//*** the PATH is hard-wired to catPathName (which is assumed to exist)
753//version numers up to ;10 are tried
754//only the "name;vers" is returned. the path is not prepended, hence the return string
755//is not a complete specification of the file
756//
757// added 11/99 - uppercase and lowercase versions of the file are tried, if necessary
758// since from marquee, the filename field (textread[0]) must be used, and can be a mix of
759// upper/lowercase letters, while the filename on the server (should) be all caps
760// now makes repeated calls to ValidFileString()
761//
762Function/S A_FindValidFilename(partialName)
763        String PartialName
764       
765        String retStr=""
766       
767        //try name with no changes - to allow for ABS files that have spaces in the names 12APR04
768        retStr = A_ValidFileString(partialName)
769        if(cmpstr(retStr,"") !=0)
770                //non-null return
771                return(retStr)
772        Endif
773       
774        //if the partial name is derived from the file header, there can be spaces at the beginning
775        //or in the middle of the filename - depending on the prefix and initials used
776        //
777        //remove any leading spaces from the name before starting
778        partialName = A_RemoveAllSpaces(partialName)
779       
780        //try name with no spaces
781        retStr = A_ValidFileString(partialName)
782        if(cmpstr(retStr,"") !=0)
783                //non-null return
784                return(retStr)
785        Endif
786       
787        //try all UPPERCASE
788        partialName = UpperStr(partialName)
789        retStr = A_ValidFileString(partialName)
790        if(cmpstr(retStr,"") !=0)
791                //non-null return
792                return(retStr)
793        Endif
794       
795        //try all lowercase (ret null if failure)
796        partialName = LowerStr(partialName)
797        retStr = A_ValidFileString(partialName)
798        if(cmpstr(retStr,"") !=0)
799                //non-null return
800                return(retStr)
801        else
802                return(retStr)
803        Endif
804End
805
806//function to test a binary file to see if it is a RAW binary SANS file
807//first checks the total bytes in the file (which for raw data is 33316 bytes)
808//**note that the "DIV" file will also show up as a raw file by the run field
809//should be listed in CAT/SHORT and in patch windows
810//
811//Function then checks the file fname (full path:file) for "RAW" run.type field
812//if not found, the data is not raw data and zero is returned
813Function A_CheckIfRawData(fname)
814        String fname
815       
816        Variable refnum,totalBytes
817        String testStr=""
818       
819        Open/R/T="????TEXT" refNum as fname
820        //get the total number of bytes in the file, to avoid moving past EOF
821        FStatus refNum
822        totalBytes = V_logEOF
823        //Print totalBytes
824        if(totalBytes!=33316)
825                //can't possibly be a raw data file
826                Close refnum
827                return(0)               //not a raw SANS file
828        Endif
829        FSetPos refNum,75
830        FReadLine/N=3 refNum,testStr
831        Close refNum
832       
833        if(cmpstr(testStr,"RAW")==0)
834                //true, is raw data file
835                Return(1)
836        else
837                //some other file
838                Return(0)
839        Endif
840End
841
842//list (input) is a list, typically returned from IndexedFile()
843//which is semicolon-delimited, and may contain filesnames from the VAX
844//that contain version numbers, where the version number appears as a separate list item
845//(and also as a non-existent file)
846//these numbers must be purged from the list, especially for display in a popup
847//or list processing of filenames
848//the function returns the list, cleaned of version numbers (up to 11)
849//raw data files will typically never have a version number other than 1.
850Function/S A_RemoveVersNumsFromList(list)
851        String list
852       
853        //get rid of version numbers first (up to 11)
854        Variable ii,num
855        String item
856        num = ItemsInList(list,";")
857        ii=1
858        do
859                item = num2str(ii)
860                list = RemoveFromList(item, list ,";" )
861                ii+=1
862        while(ii<12)
863       
864        return (list)
865End
866
867//Function attempts to find valid filename from partial name that has been stripped of
868//the VAX version number. The partial name is tried first
869//*** the PATH is hard-wired to catPathName (which is assumed to exist)
870//version numers up to ;10 are tried
871//only the "name;vers" is returned. the path is not prepended, hence the return string
872//is not a complete specification of the file
873//
874Function/S A_ValidFileString(partialName)
875        String partialName
876       
877        String tempName = "",msg=""
878        Variable ii,refnum
879       
880        ii=0
881        do
882                if(ii==0)
883                        //first pass, try the partialName
884                        tempName = partialName
885                        Open/Z/R/T="????TEXT"/P=catPathName refnum tempName     //Does open file (/Z flag)
886                        if(V_flag == 0)
887                                //file exists
888                                Close refnum            //YES needed,
889                                break
890                        endif
891                else
892                        tempName = partialName + ";" + num2str(ii)
893                        Open/Z/R/T="????TEXT"/P=catPathName refnum tempName
894                        if(V_flag == 0)
895                                //file exists
896                                Close refnum
897                                break
898                        endif
899                Endif
900                ii+=1
901                //print "ii=",ii
902        while(ii<11)
903        //go get the selected bits of information, using tempName, which exists
904        if(ii>=11)
905                //msg = partialName + " not found. is version number > 11?"
906                //DoAlert 0, msg
907                //PathInfo catPathName
908                //Print S_Path
909                Return ("")             //use null string as error condition
910        Endif
911       
912        Return (tempName)
913End
914
915//function to remove all spaces from names when searching for filenames
916//the filename (as saved) will never have interior spaces (TTTTTnnn_AB _Bnnn)
917//but the text field in the header WILL, if less than 3 characters were used for the
918//user's initials, and can have leading spaces if prefix was less than 5 characters
919//
920//returns a string identical to the original string, except with the interior spaces removed
921//
922Function/S A_RemoveAllSpaces(str)
923        String str
924       
925        String tempstr = str
926        Variable ii,spc,len             //should never be more than 2 or 3 trailing spaces in a filename
927        ii=0
928        do
929                len = strlen(tempStr)
930                spc = strsearch(tempStr," ",0)          //is the last character a space?
931                if (spc == -1)
932                        break           //no more spaces found, get out
933                endif
934                str = tempstr
935                tempStr = str[0,(spc-1)] + str[(spc+1),(len-1)] //remove the space from the string
936        While(1)        //should never be more than 2 or 3
937       
938        If(strlen(tempStr) < 1)
939                tempStr = ""            //be sure to return a null string if problem found
940        Endif
941       
942        //Print strlen(tempstr)
943       
944        Return(tempStr)
945               
946End
947
948//AJJ Oct 2008
949//Moved from GaussUtils - makes more sense to have it here
950
951// utility used in the "PlotSmeared...() macros to get a list of data folders
952//
953//1:    Waves.
954//2:    Numeric variables.
955//3:    String variables.
956//4:    Data folders.
957Function/S GetAList(type)
958        Variable type
959       
960        SetDataFolder root:
961       
962        String objName,str=""
963        Variable index = 0
964        do
965                objName = GetIndexedObjName(":", type, index)
966                if (strlen(objName) == 0)
967                        break
968                endif
969                //Print objName
970                str += objName + ";"
971                index += 1
972        while(1)
973       
974        // remove myGlobals, Packages, etc. from the folder list
975        if(type==4)
976                str = RemoveFromList("myGlobals", str , ";" )
977                str = RemoveFromList("Packages", str, ";")
978                str = RemoveFromList("AutoFit", str, ";")
979                str = RemoveFromList("TISANE", str, ";")
980                str = RemoveFromList("HayPenMSA", str, ";")
981                str = RemoveFromList("SAS", str, ";")                   //from Irena
982                str = RemoveFromList("USAXS", str, ";")
983                str = RemoveFromList("RAW;SAM;EMP;BGD;DIV;MSK;ABS;CAL;COR;STO;SUB;DRK;SAS;", str  ,";")                 //root level folders present in old reduction experiments
984        endif
985       
986        return(str)
987End
988
989
990//returns the path to the file, or null if cancel
991//
992// either the T="????" or the /F flags work to set the filter to "all files"
993// but the T is essentially obsolete, /F is new for Igor 6.1 and recommended
994Function/S DoOpenFileDialog(msg)
995        String msg
996       
997        Variable refNum
998//      String message = "Select a file"
999        String outputPath
1000       
1001        String fileFilters = "All Files:.*;"
1002               
1003//      Open/D/R/T="????"/M=msg refNum
1004        Open/D/R/F=fileFilters/M=msg refNum
1005        outputPath = S_fileName
1006       
1007        return outputPath
1008End
1009
1010// returns the path to the file, or null if the user cancelled
1011// fancy use of optional parameters
1012//
1013// enforce short file names (25 characters)
1014Function/S DoSaveFileDialog(msg,[fname,suffix])
1015        String msg,fname,suffix
1016        Variable refNum
1017//      String message = "Save the file as"
1018
1019        if(ParamIsDefault(fname))
1020//              Print "fname not supplied"
1021                fname = ""
1022        endif
1023        if(ParamIsDefault(suffix))
1024//              Print "suffix not supplied"
1025                suffix = ""
1026        endif
1027       
1028        String outputPath,tmpName,testStr
1029        Variable badLength=0,maxLength=25,l1,l2
1030       
1031       
1032        tmpName = fname + suffix
1033       
1034        do
1035                badLength=0
1036                Open/D/M=msg/T="????" refNum as tmpName         //OS will allow 255 characters, but then I can't read it back in!
1037                outputPath = S_fileName
1038               
1039                testStr = ParseFilePath(0, outputPath, ":", 1, 0)               //just the filename
1040                if(strlen(testStr)==0)
1041                        break           //cancel, allow exit
1042                endif
1043                if(strlen(testStr) > maxLength)
1044                        badlength = 1
1045                        DoAlert 2,"File name is too long. Is\r"+testStr[0,maxLength-1]+"\rOK?"
1046                        if(V_flag==3)
1047                                outputPath = ""
1048                                break
1049                        endif
1050                        if(V_flag==1)                   //my suggested name is OK, so trim the output
1051                                badlength=0
1052                                l1 = strlen(testStr)            //too long length
1053                                l1 = l1-maxLength               //number to trim
1054                                //Print outputPath
1055                                l2=strlen(outputPath)
1056                                outputPath = outputPath[0,l2-1-l1]
1057                                //Print "modified  ",outputPath
1058                        endif
1059                        //if(V_flag==2)  do nothing, let it go around again
1060                endif
1061               
1062        while(badLength)
1063       
1064        return outputPath
1065End
1066
1067// returns a shortened file name (26 characters max) so that the loader
1068// won't try to create Igor objects that have names that are longer than 31
1069//
1070Function/S ShortFileNameString(inStr)
1071        String inStr
1072
1073        String outStr=""
1074        Variable maxLength=25
1075        Variable nameTooLong=0
1076        String/G root:Packages:NIST:gShortNameStr = inStr[0,maxLength-1]
1077        SVAR newStr = root:Packages:NIST:gShortNameStr
1078
1079        if(strlen(inStr) <= maxLength)
1080                return (inStr)          //length OK
1081        else
1082                do
1083                        nameTooLong = 0
1084                       
1085                        DoAlert 1,"File name is too long. Is\r"+inStr[0,maxLength-1]+"\rOK?"
1086                        if(V_flag==1)                   //my suggested name is OK, so trim the output
1087                                outStr = inStr[0,maxLength-1]
1088                                //Print "modified  ",outStr
1089                                newStr=outStr
1090                                return(outStr)
1091                        endif
1092       
1093       
1094                        if(V_flag == 2)         //not OK, do something about it
1095                               
1096                                DoWindow/F ShorterNameInput             //it really shouldn't exist...
1097                                if(V_flag==0)
1098                               
1099                                        NewPanel /W=(166,90,666,230) as "Enter a Shorter Name"
1100                                        DoWindow/C ShorterNameInput
1101                                        SetDrawLayer UserBack
1102                                        TitleBox title0,pos={35,8},size={261,20},title=" Enter a shorter file name. It must be 25 characters or less "
1103                                        TitleBox title0,fSize=12,fStyle=1
1104                                        SetVariable setvar0,pos={21,52},size={300,15},title="New name",value= _STR:newStr
1105                                        SetVariable setvar0,proc=ShorterNameSetVarProc,fsize=12
1106                                        SetVariable setvar0 valueBackColor=(65535,49151,49151)
1107                                        Button button0,pos={259,87},size={60,20},title="Done"
1108                                        Button button0,proc=ShorterNameDoneButtonProc
1109                               
1110                                endif
1111                               
1112                                PauseForUser ShorterNameInput
1113                               
1114                                // this really should force a good name, but there could be errors that I'm not catching
1115//                              Print newStr, strlen(newStr)
1116                                nameTooLong = 0
1117                        endif
1118               
1119                while (nameTooLong)
1120               
1121                return(newStr)
1122               
1123        endif
1124               
1125End
1126
1127
1128// for the ShortFileNameString() - PauseForUser to get a shorter file name
1129Function ShorterNameSetVarProc(sva) : SetVariableControl
1130        STRUCT WMSetVariableAction &sva
1131               
1132        switch( sva.eventCode )
1133                case 1: // mouse up
1134                case 2: // Enter key
1135                case 3: // Live update
1136                                String sv = sva.sval
1137                                if( strlen(sv) > 25 )
1138                                        sv= sv[0,24]
1139                                        SetVariable  $(sva.ctrlName),win=$(sva.win),value=_STR:sv
1140                                        SetVariable setvar0 valueBackColor=(65535,49151,49151)
1141                                        Beep
1142                                else
1143                                        SetVariable setvar0 valueBackColor=(65535,65535,65535)
1144                                endif
1145                                break
1146                endswitch
1147        return 0
1148End
1149
1150// for the ShortFileNameString() - PauseForUser to get a shorter file name
1151Function ShorterNameDoneButtonProc(ba) : ButtonControl
1152        STRUCT WMButtonAction &ba
1153       
1154        String win = ba.win
1155
1156        switch (ba.eventCode)
1157                case 2:
1158                        SVAR newStr = root:Packages:NIST:gShortNameStr
1159                        ControlInfo setvar0
1160                        newStr = S_value
1161                        DoWindow/K ShorterNameInput
1162                       
1163                        break
1164        endswitch
1165
1166        return 0
1167End
1168
1169
1170// a function common to many panels, so put the basic version here that simply
1171// returns null string if no functions are present. Calling procedures can
1172// add to the list to customize as needed.
1173// show the available models
1174// not the f*(cw,xw) point calculations
1175// not the *X(cw,xw) XOPS
1176//
1177// KIND:10 should show only user-defined curve fitting functions
1178// - not XOPs
1179// - not other user-defined functions
1180Function/S User_FunctionPopupList()
1181        String list,tmp
1182        list = FunctionList("*",";","KIND:10")          //get every user defined curve fit function
1183
1184        //now start to remove everything the user doesn't need to see...
1185
1186        tmp = FunctionList("*_proto",";","KIND:10")             //prototypes
1187        list = RemoveFromList(tmp, list  ,";")
1188       
1189        //prototypes that show up if GF is loaded
1190        list = RemoveFromList("GFFitFuncTemplate", list)
1191        list = RemoveFromList("GFFitAllAtOnceTemplate", list)
1192        list = RemoveFromList("NewGlblFitFunc", list)
1193        list = RemoveFromList("NewGlblFitFuncAllAtOnce", list)
1194        list = RemoveFromList("GlobalFitFunc", list)
1195        list = RemoveFromList("GlobalFitAllAtOnce", list)
1196        list = RemoveFromList("GFFitAAOStructTemplate", list)
1197        list = RemoveFromList("NewGF_SetXWaveInList", list)
1198        list = RemoveFromList("NewGlblFitFuncAAOStruct", list)
1199       
1200        // more to remove as a result of 2D/Gizmo
1201        list = RemoveFromList("A_WMRunLessThanDelta", list)
1202        list = RemoveFromList("WMFindNaNValue", list)
1203        list = RemoveFromList("WM_Make3DBarChartParametricWave", list)
1204        list = RemoveFromList("UpdateQxQy2Mat", list)
1205        list = RemoveFromList("MakeBSMask", list)
1206       
1207        // MOTOFIT/GenFit bits
1208        tmp = "GEN_allatoncefitfunc;GEN_fitfunc;GetCheckBoxesState;MOTO_GFFitAllAtOnceTemplate;MOTO_GFFitFuncTemplate;MOTO_NewGF_SetXWaveInList;MOTO_NewGlblFitFunc;MOTO_NewGlblFitFuncAllAtOnce;GeneticFit_UnSmearedModel;GeneticFit_SmearedModel;"
1209        list = RemoveFromList(tmp, list  ,";")
1210
1211        // SANS Reduction bits
1212        tmp = "ASStandardFunction;Ann_1D_Graph;Avg_1D_Graph;BStandardFunction;CStandardFunction;Draw_Plot1D;MyMat2XYZ;"
1213        list = RemoveFromList(tmp, list  ,";")
1214        tmp = "NewDirection;SANSModelAAO_MCproto;Monte_SANS_Threaded;Monte_SANS_NotThreaded;Monte_SANS_W1;Monte_SANS_W2;Monte_SANS_W3;Monte_SANS_W4;Monte_SANS;FractionReachingDetector;TwoLevel_EC;SmearedTwoLevel_EC;"
1215        list = RemoveFromList(tmp, list  ,";")
1216
1217
1218        // USANS Reduction bits
1219        tmp = "DSM_Guinier_Fit;RemoveMaskedPoints;"
1220        list = RemoveFromList(tmp, list  ,";")
1221
1222        //more functions from analysis models (2008)
1223        tmp = "Barbell_Inner;Barbell_Outer;Barbell_integrand;BCC_Integrand;Integrand_BCC_Inner;Integrand_BCC_Outer;"
1224        list = RemoveFromList(tmp, list  ,";")
1225        tmp = "CapCyl;CapCyl_Inner;CapCyl_Outer;ConvLens;ConvLens_Inner;ConvLens_Outer;"
1226        list = RemoveFromList(tmp, list  ,";")
1227        tmp = "Dumb;Dumb_Inner;Dumb_Outer;FCC_Integrand;Integrand_FCC_Inner;Integrand_FCC_Outer;"
1228        list = RemoveFromList(tmp, list  ,";")
1229        tmp = "Integrand_SC_Inner;Integrand_SC_Outer;SC_Integrand;SphCyl;SphCyl_Inner;SphCyl_Outer;"
1230        list = RemoveFromList(tmp, list  ,";")
1231        tmp = "CSPP_Outer;CSPP_Inner;PP_Outer;PP_Inner;"
1232        list = RemoveFromList(tmp, list  ,";")
1233        tmp = "Guinier_Fit;"
1234        list = RemoveFromList(tmp, list  ,";")
1235
1236        tmp = FunctionList("f*",";","NPARAMS:2")                //point calculations
1237        list = RemoveFromList(tmp, list  ,";")
1238       
1239        tmp = FunctionList("fSmear*",";","NPARAMS:3")           //smeared dependency calculations
1240        list = RemoveFromList(tmp, list  ,";")
1241       
1242        // anything that might be included in Irena
1243        tmp = FunctionList("GEN_*",";","KIND:10")
1244        list = RemoveFromList(tmp, list  ,";")
1245        tmp = FunctionList("IN2G_*",";","KIND:10")
1246        list = RemoveFromList(tmp, list  ,";")
1247        tmp = FunctionList("IR1A_*",";","KIND:10")
1248        list = RemoveFromList(tmp, list  ,";")
1249        tmp = FunctionList("IR1B_*",";","KIND:10")
1250        list = RemoveFromList(tmp, list  ,";")
1251        tmp = FunctionList("IR1U_*",";","KIND:10")
1252        list = RemoveFromList(tmp, list  ,";")
1253        tmp = FunctionList("IR1V_*",";","KIND:10")
1254        list = RemoveFromList(tmp, list  ,";")
1255        tmp = FunctionList("IR1_*",";","KIND:10")
1256        list = RemoveFromList(tmp, list  ,";")
1257        tmp = FunctionList("IR2D_*",";","KIND:10")
1258        list = RemoveFromList(tmp, list  ,";")
1259
1260        tmp = FunctionList("IR2D_*",";","KIND:10")
1261        list = RemoveFromList(tmp, list  ,";")
1262        tmp = FunctionList("IR2H_*",";","KIND:10")
1263        list = RemoveFromList(tmp, list  ,";") 
1264        tmp = FunctionList("IR2L_*",";","KIND:10")
1265        list = RemoveFromList(tmp, list  ,";")
1266        tmp = FunctionList("IR2Pr_*",";","KIND:10")
1267        list = RemoveFromList(tmp, list  ,";")
1268        tmp = FunctionList("IR2R_*",";","KIND:10")
1269        list = RemoveFromList(tmp, list  ,";")
1270        tmp = FunctionList("IR2S_*",";","KIND:10")
1271        list = RemoveFromList(tmp, list  ,";")
1272        tmp = FunctionList("IR2_*",";","KIND:10")
1273        list = RemoveFromList(tmp, list  ,";")
1274        tmp = FunctionList("*LogLog",";","KIND:10")
1275        list = RemoveFromList(tmp, list  ,";")
1276       
1277        //functions included in Nika
1278        tmp = FunctionList("NI1*",";","KIND:10")
1279        list = RemoveFromList(tmp, list  ,";")
1280        tmp = FunctionList("TransAx_*",";","KIND:10")
1281        list = RemoveFromList(tmp, list  ,";")
1282        tmp = FunctionList("TransformAxis*",";","KIND:10")
1283        list = RemoveFromList(tmp, list  ,";")
1284        tmp = FunctionList("erfForNormal*",";","KIND:10")
1285        list = RemoveFromList(tmp, list  ,";")
1286
1287        // functions in Indra (USAXS)
1288        tmp = FunctionList("IN2Q_*",";","KIND:10")
1289        list = RemoveFromList(tmp, list  ,";")
1290        tmp = FunctionList("IN3_*",";","KIND:10")
1291        list = RemoveFromList(tmp, list  ,";")
1292       
1293//      tmp = FunctionList("*X",";","KIND:4")           //XOPs, but these shouldn't show up if KIND:10 is used initially
1294//      Print "X* = ",tmp
1295//      print " "
1296//      list = RemoveFromList(tmp, list  ,";")
1297       
1298        //non-fit functions that I can't seem to filter out
1299        list = RemoveFromList("BinaryHS_PSF11;BinaryHS_PSF12;BinaryHS_PSF22;EllipCyl_Integrand;PP_Inner;PP_Outer;Phi_EC;TaE_Inner;TaE_Outer;",list,";")
1300
1301        // from 2010 model functions
1302        list = RemoveFromList("fTwoYukawa;DoBoxGraph;Gauss2D_theta;",list,";")
1303       
1304        // from Debye Sphere method
1305        list = RemoveFromList("CalcIQRfromMat;ConnectPoints2D;ConnectPoints3D;ConnectPoints3D_old;ConnectedRodFill;ConvertXYZto3N;CylindersAtPoints;",list,";")
1306        list = RemoveFromList("FillSphere;FillSphere3;FillSphereRadius;FillSphereRadiusNoOverlap;FillXCylinder;FillXYCircle;FillXZCircle;FillYCylinder;",list,";")
1307        list = RemoveFromList("FillYZCircle;FillZCylinder;PadMatrix;RandomFill3DMat;RandomPoints2D;SobolFill3DMat;SphereAtEachPoint;UnConnectedRodFill;XYZV_toByteVoxels;",list,";")
1308        list = RemoveFromList("MakeTriplet;SobolPoints2D;X_CylindersAtPoints;X_CylindersHexagonalGrid;X_CylindersSquareGrid;maxDistance_Threaded;KR_MultiCylinder;",list,";")
1309        list = RemoveFromList("X_CoreShellCylinderHexGrid;FillPlaneHexagonal;FillPlaneSquareGrid;",list,";")
1310
1311// from Polarization
1312        list = RemoveFromList("ParseDecayRow;ParseFlipperRow;",list,";")
1313
1314// from 2012 models
1315        list = RemoveFromList("cng_integ;",list,";")
1316
1317// from 2012 Event Mode Processing
1318        list = RemoveFromList("CleanupTimes;IndexForHistogram;JointHistogram;MakeFibonacciWave;Osc_ProcessEvents;SetFibonacciBins;SetLinearBins;SetLogBins;Stream_ProcessEvents;",list,";")
1319
1320// from 2013 Simulation
1321//      list = RemoveFromList("EC_Empirical;SmearedEC_Empirical;",list,";")
1322        list = RemoveFromList("SAS_XS_Sphere;",list,";")
1323               
1324        list = SortList(list)
1325        return(list)
1326End
1327
1328
1329///////////////////////////////////////////////////
1330// old SANSPreferences have been moved here to a common place and renamed to "NCNR Preferences" so that they
1331// are common to all of the packages (and will appear on all of the menus)
1332//
1333// globals moved to root:Packages:NIST: since this is generated by all packages.
1334//
1335///////////////////////////
1336// user preferences
1337//
1338// globals are created in initialize.ipf
1339//
1340// this panel allows for user modification
1341///////////////////////////
1342Proc Show_Preferences_Panel()
1343
1344        DoWindow/F Pref_Panel
1345        if(V_flag==0)
1346                // only re-initialize if the variables don't exist, so you don't overwrite what users have changed
1347                if( exists("root:Packages:NIST:gXML_Write") != 2 )              //if the global variable does not exist, initialize
1348                        Initialize_Preferences()
1349                endif
1350                Pref_Panel()
1351        Endif
1352//      Print "Preferences Panel stub"
1353End
1354
1355Proc Initialize_Preferences()
1356        // create the globals here if they are not already present
1357       
1358        // each package initialization should call this to repeat the initialization
1359        // without overwriting what was already set
1360       
1361        Variable val
1362       
1363        ///// items for SANS reduction
1364        val = NumVarOrDefault("root:Packages:NIST:gLogScalingAsDefault", 1 )
1365        Variable/G root:Packages:NIST:gLogScalingAsDefault=val
1366       
1367        val = NumVarOrDefault("root:Packages:NIST:gAllowDRK", 0 )
1368        Variable/G root:Packages:NIST:gAllowDRK=val                     //don't show DRK as default
1369       
1370        val = NumVarOrDefault("root:Packages:NIST:gDoTransCheck", 1 )
1371        Variable/G root:Packages:NIST:gDoTransCheck=val
1372       
1373        val = NumVarOrDefault("root:Packages:NIST:gBinWidth", 1 )
1374        Variable/G root:Packages:NIST:gBinWidth=val
1375       
1376        val = NumVarOrDefault("root:Packages:NIST:gNPhiSteps", 72 )
1377        Variable/G root:Packages:NIST:gNPhiSteps=val
1378       
1379        // flags to turn detector corrections on/off for testing (you should leave these ON)
1380        val = NumVarOrDefault("root:Packages:NIST:gDoDetectorEffCorr", 1 )
1381        Variable/G root:Packages:NIST:gDoDetectorEffCorr = 1
1382       
1383        val = NumVarOrDefault("root:Packages:NIST:gDoTransmissionCorr", 1 )
1384        Variable/G root:Packages:NIST:gDoTransmissionCorr = 1
1385       
1386       
1387        /// items for SANS Analysis
1388       
1389       
1390        /// items for USANS Reduction
1391       
1392       
1393        /// items for everyone
1394        val = NumVarOrDefault("root:Packages:NIST:gXML_Write", 0 )
1395        Variable/G root:Packages:NIST:gXML_Write = val
1396       
1397       
1398end
1399
1400Function LogScalePrefCheck(ctrlName,checked) : CheckBoxControl
1401        String ctrlName
1402        Variable checked
1403       
1404        NVAR gLog = root:Packages:NIST:gLogScalingAsDefault
1405        glog=checked
1406        //print "log pref checked = ",checked
1407End
1408
1409Function DRKProtocolPref(ctrlName,checked) : CheckBoxControl
1410        String ctrlName
1411        Variable checked
1412       
1413        NVAR gDRK = root:Packages:NIST:gAllowDRK
1414        gDRK = checked
1415        //Print "DRK preference = ",checked
1416End
1417
1418Function UnityTransPref(ctrlName,checked) : CheckBoxControl
1419        String ctrlName
1420        Variable checked
1421       
1422        NVAR gVal = root:Packages:NIST:gDoTransCheck
1423        gVal = checked
1424End
1425
1426Function XMLWritePref(ctrlName,checked) : CheckBoxControl
1427        String ctrlName
1428        Variable checked
1429       
1430        NVAR gVal = root:Packages:NIST:gXML_Write
1431        gVal = checked
1432End
1433
1434Function DoTransCorrPref(ctrlName,checked) : CheckBoxControl
1435        String ctrlName
1436        Variable checked
1437       
1438        NVAR gVal = root:Packages:NIST:gDoTransmissionCorr
1439        gVal = checked
1440End
1441
1442Function DoEfficiencyCorrPref(ctrlName,checked) : CheckBoxControl
1443        String ctrlName
1444        Variable checked
1445       
1446        NVAR gVal = root:Packages:NIST:gDoDetectorEffCorr
1447        gVal = checked
1448End
1449
1450Function PrefDoneButtonProc(ctrlName) : ButtonControl
1451        String ctrlName
1452       
1453        DoWindow/K pref_panel
1454End
1455
1456Proc Pref_Panel()
1457        PauseUpdate; Silent 1           // building window...
1458        NewPanel /W=(646,208,1070,468)/K=2 as "NCNR Preference Panel"
1459        DoWindow/C pref_panel
1460        ModifyPanel cbRGB=(49694,61514,27679)
1461        SetDrawLayer UserBack
1462        ModifyPanel fixedSize=1
1463//////
1464//on main portion of panel, always visible
1465        Button PrefPanelButtonA,pos={354,12},size={50,20},proc=PrefDoneButtonProc,title="Done"
1466
1467        TabControl PrefTab,pos={7,49},size={410,202},tabLabel(0)="General",proc=PrefTabProc
1468        TabControl PrefTab,tabLabel(1)="SANS",tabLabel(2)="USANS",tabLabel(3)="Analysis"
1469        TabControl PrefTab,value=0
1470        TabControl PrefTab labelBack=(49694,61514,27679)
1471       
1472//on tab(0) - General - initially visible
1473        CheckBox PrefCtrl_0a,pos={21,96},size={124,14},proc=XMLWritePref,title="Use canSAS XML Output"
1474        CheckBox PrefCtrl_0a,help={"Checking this will set the default output format to be canSAS XML rather than NIST 6 column"}
1475        CheckBox PrefCtrl_0a,value= root:Packages:NIST:gXML_Write
1476
1477//on tab(1) - SANS
1478        CheckBox PrefCtrl_1a,pos={21,100},size={171,14},proc=LogScalePrefCheck,title="Use Log scaling for 2D data display"
1479        CheckBox PrefCtrl_1a,help={"Checking this will display 2D SANS data with a logarithmic color scale of neutron counts. If not checked, the color mapping will be linear."}
1480        CheckBox PrefCtrl_1a,value= root:Packages:NIST:gLogScalingAsDefault
1481        CheckBox PrefCtrl_1b,pos={21,120},size={163,14},proc=DRKProtocolPref,title="Allow DRK correction in protocols"
1482        CheckBox PrefCtrl_1b,help={"Checking this will allow DRK correction to be used in reduction protocols. You will need to re-draw the protocol panel for this change to be visible."}
1483        CheckBox PrefCtrl_1b,value= root:Packages:NIST:gAllowDRK
1484        CheckBox PrefCtrl_1c,pos={21,140},size={137,14},proc=UnityTransPref,title="Check for Transmission = 1"
1485        CheckBox PrefCtrl_1c,help={"Checking this will check for SAM or EMP Trans = 1 during data correction"}
1486        CheckBox PrefCtrl_1c,value= root:Packages:NIST:gDoTransCheck
1487        SetVariable PrefCtrl_1d,pos={21,170},size={200,15},title="Averaging Bin Width (pixels)"
1488        SetVariable PrefCtrl_1d,limits={1,100,1},value= root:Packages:NIST:gBinWidth
1489        SetVariable PrefCtrl_1e,pos={21,195},size={200,15},title="# Phi Steps (annular avg)"
1490        SetVariable PrefCtrl_1e,limits={1,360,1},value= root:Packages:NIST:gNPhiSteps
1491        CheckBox PrefCtrl_1f title="Do Transmssion Correction?",size={140,14},value=root:Packages:NIST:gDoTransmissionCorr,proc=DoTransCorrPref
1492        CheckBox PrefCtrl_1f pos={255,100},help={"TURN OFF ONLY FOR DEBUGGING. This corrects the data for angle dependent transmssion."}
1493        CheckBox PrefCtrl_1g title="Do Efficiency Correction?",size={140,14},proc=DoEfficiencyCorrPref
1494        CheckBox PrefCtrl_1g value=root:Packages:NIST:gDoDetectorEffCorr,pos={255,120},help={"TURN OFF ONLY FOR DEBUGGING. This corrects the data for angle dependent detector efficiency."}
1495
1496
1497        CheckBox PrefCtrl_1a,disable=1
1498        CheckBox PrefCtrl_1b,disable=1
1499        CheckBox PrefCtrl_1c,disable=1
1500        SetVariable PrefCtrl_1d,disable=1
1501        SetVariable PrefCtrl_1e,disable=1
1502        CheckBox PrefCtrl_1f,disable=1
1503        CheckBox PrefCtrl_1g,disable=1
1504
1505//on tab(2) - USANS
1506        GroupBox PrefCtrl_2a pos={21,100},size={1,1},title="nothing to set",fSize=12
1507
1508        GroupBox PrefCtrl_2a,disable=1
1509
1510
1511//on tab(3) - Analysis
1512        GroupBox PrefCtrl_3a pos={21,100},size={1,1},title="nothing to set",fSize=12
1513       
1514        GroupBox PrefCtrl_3a,disable=1
1515
1516EndMacro
1517
1518// function to control the drawing of controls in the TabControl on the main panel
1519// Naming scheme for the controls MUST be strictly adhered to... else controls will
1520// appear in odd places...
1521// all controls are named PrefCtrl_NA where N is the tab number and A is the letter denoting
1522// the controls position on that particular tab.
1523// in this way, they will always be drawn correctly..
1524//
1525Function PrefTabProc(name,tab)
1526        String name
1527        Variable tab
1528       
1529//      Print "name,number",name,tab
1530        String ctrlList = ControlNameList("",";"),item="",nameStr=""
1531        Variable num = ItemsinList(ctrlList,";"),ii,onTab
1532        for(ii=0;ii<num;ii+=1)
1533                //items all start w/"PrefCtrl_", 9 characters
1534                item=StringFromList(ii, ctrlList ,";")
1535                nameStr=item[0,8]
1536                if(cmpstr(nameStr,"PrefCtrl_")==0)
1537                        onTab = str2num(item[9])                        //[9] is a number
1538                        ControlInfo $item
1539                        switch(abs(V_flag))     
1540                                case 1:
1541                                        Button $item,disable=(tab!=onTab)
1542                                        break
1543                                case 2:
1544                                        CheckBox $item,disable=(tab!=onTab)
1545                                        break
1546                                case 5:
1547                                        SetVariable $item,disable=(tab!=onTab)
1548                                        break
1549                                case 10:       
1550                                        TitleBox $item,disable=(tab!=onTab)
1551                                        break
1552                                case 4:
1553                                        ValDisplay $item,disable=(tab!=onTab)
1554                                        break
1555                                case 9:
1556                                        GroupBox $item,disable=(tab!=onTab)
1557                                        break
1558                                // add more items to the switch if different control types are used
1559                        endswitch
1560                endif
1561        endfor
1562        return(0)
1563End
1564
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